Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5768g00013 ATGGAAATTCCTTGCCTTCTTTCTCTCTTTCTTCTGATTTCTTTTCTCATTCCTCGTATGGTTCTTGGAACTGCGGAGCTTAGAGCTCTGATGGAGTTGAAGTCCTCTCTGGACCCAGATGGCAAGATCCTAGCCTCGTGGATCAGTGACGGTGACCCATGCAGTGGCTCGTTCGAAGGGGTTGCGTGCAACCAGAACCAGAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCCGGTTGGCTATCTCCAGCACTGGCTGAACTCAAATGCTTGTCGGGTTTATACTTGCATTATAACAACCTTTCTGGTGAGATACTCCAAGTGCTGCAGTTAGGTGATAACCAGTTGGTGGGGAATATACCGACACAGATGGGTTCGTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCCCTTAGCTTGGGGACTCTAGAGAAGTTAAGAAGGCTAAATTTGAGCTTCAACAACTTTAATGGTACTGTTCCGGCAACACTAGCACATCTTCAACATTTGGAAGTTCTAGACGTTCAGAACAATTCTTTATCAGGAATTGTTCCTTCGGCATTGAAGAGACTTGGGGAAGGTTTCCAAGGTGCAAACAATCCGGGCTTATGTGGAGTTGAGTTTTCTACTTTGAGAGCTTGCAACAAAGATCAGAATTTAAACGTCAACCATATTGATACCTTGGATCGAGATCAACCCAAAAAGGCTCTCCCAGAGCCTGCAAATGTTCAGTTGCATTGTGATCACACCCATTGTTCAAAATCAAGGTTTCCTCAAATTGTCATCACAGTAGGTGTTATAGCTGTTACTCTTACATTCGTATGTGCTGGGTTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAACGGATCAGCAATACATCAAGTTCTTCTTCTCAAGGGAAACTTAGTCCTTACCAGCCTAAAGAGTTGTACACAAAAAGTCCTTCTGCACTTGTTAATATTGAGTATTATAGTGGGTGGGATCATTTGTCTAACGGTCAAAACGCTGATGTCGGTGGGTTATTGAATGATTATCTAACTCAATTCAGGTTTAATGTGGATGAGGTTGAATCCGCAACACAGTATTTCTCGGAAGCCAGTTTACTTGGTAAGAGCAAATTCTCATCAGTTTATAAAGGAGTTATCAGAGATGGTTCTCTTGTGGCTATCAGAAGCATCAGCGTGACATGCTGTAAAACCGAGGAAGCCGAATTTGTAAAGGGGTTGGACTTACTAACCTCTCTGAGACATGAAAACCTTGTTAGGCTGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTTTCCCGATATCTTGACTTAGAAGATGGAAGTGACCATGTGCTCGAGTGGTCCAAAAGAGTTTCTATTATCAAAGGCATTGCAAACGGCATTGGATATCTTCATAGCAATGATGCAAGCAAACCTACAATAGTTCACCAGAACATTTCAGTGGAAAATATTCTCCTAGACAATCAGTTTAATCCATTGATCATGGATGCTGGACTACCTAAGCTTCTCGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATACTTGGCTCCCGAATACATTACTACCGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTCTGTCTGGCAAGACGACAATAGGTAGTTCAATACGTACAGCAGTTGAGTCTTTCAGATTTGATGATTCTGTTGATGCCAATCTTAGGGGAACGTATTCAAAATCTGAAGCAGCTACACTTTCAAAGCTTGCAATACAGTGTACTCATGAATCTCCTGACCAAAGACCAACGGTGGTGGATGTGATTCAGGAGTTGAGTGTGTCTTCTGCTCATTTGTAA 1941 0.4225 MEIPCLLSLFLLISFLIPRMVLGTAELRALMELKSSLDPDGKILASWISDGDPCSGSFEGVACNQNQKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEILQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGTLEKLRRLNLSFNNFNGTVPATLAHLQHLEVLDVQNNSLSGIVPSALKRLGEGFQGANNPGLCGVEFSTLRACNKDQNLNVNHIDTLDRDQPKKALPEPANVQLHCDHTHCSKSRFPQIVITVGVIAVTLTFVCAGFLTFFRYRRQKQRISNTSSSSSQGKLSPYQPKELYTKSPSALVNIEYYSGWDHLSNGQNADVGGLLNDYLTQFRFNVDEVESATQYFSEASLLGKSKFSSVYKGVIRDGSLVAIRSISVTCCKTEEAEFVKGLDLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSRYLDLEDGSDHVLEWSKRVSIIKGIANGIGYLHSNDASKPTIVHQNISVENILLDNQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDDSVDANLRGTYSKSEAATLSKLAIQCTHESPDQRPTVVDVIQELSVSSAHL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5768g00013 646 Gene3D Transferase(Phosphotransferase) domain 1 455 645 - -
Vium5768g00013 646 Gene3D Phosphorylase Kinase; domain 1 344 452 - -
Vium5768g00013 646 SUPERFAMILY Protein kinase-like (PK-like) 356 640 IPR011009 -
Vium5768g00013 646 FunFam Leucine-rich repeat receptor protein kinase EMS1 106 197 - -
Vium5768g00013 646 Gene3D Ribonuclease Inhibitor 109 224 IPR032675 -
Vium5768g00013 646 ProSiteProfiles Protein kinase domain profile. 374 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5768g00013 646 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 79 639 - -
Vium5768g00013 646 SUPERFAMILY L domain-like 26 201 - -
Vium5768g00013 646 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Vium5768g00013 646 Gene3D Ribonuclease Inhibitor 25 108 IPR032675 -
Vium5768g00013 646 Pfam Protein tyrosine and serine/threonine kinase 378 639 IPR001245 GO:0004672|GO:0006468
Vium5768g00013 646 FunFam Protein NSP-INTERACTING KINASE 2 453 643 - -
Vium5768g00013 646 SMART LRR_typ_2 177 200 IPR003591 -
Vium5768g00013 646 SMART LRR_typ_2 153 176 IPR003591 -
Vium5768g00013 646 FunFam Protein NSP-INTERACTING KINASE 2 345 452 - -
Vium5768g00013 646 Pfam Leucine rich repeat 155 201 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5768g00013 Vium-Chr5768 55118 58446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5768g00013 5 487 Miscellaneous Gene Families AT4G22730 53.484 4.76e-178 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vium5768g00013 PK_Tyr_Ser-Thr 2.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5768g00013 - - gmx:100797612 1080.47