Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5763g00004 ATGAGAATTTTAGTGTTTGAAAAACGAAACAATAGGTTTTTGCCAACTAGGAAGAACAGGGAGAGGCGGAGACTAGAAAAAGAAACACGTGAATCAATTCTGAAGCTTATTGAGACCAAGAGCAACACGGGAGAAAATGCAAGAAATGTACTAAGTTCTTTGATGTGTTCCTACAAGAATGAGGTTGGTGGAGAAGAAAAGTTAAGGGTGGAAGAAATTATAGATGAATGTAAAACCATCTACTTTGCTGGGAAGGAAACTACAGCTAACTTGTTAACTTGGACACTTCTTCTATTAGCAAAACATCAGGAATGGCAAAGTAAGGCACGTGAAGAAGTTCTTCGTGTTATTAAACACAATCAACTTCCTGTTGCGGACAATTTAAGCGACCTTAAGATTGTTAGCATGATAATTAACGAAACACTTCGGCTCTATCCTCCAGCAGTGATGCTAATGAGGCAAGCCTCTAAAGATGTGATGCTTGGAAGCATTAATGTTCCTGCTAAGACTCAACTCTATTTGGCATTGACTGCTGTTCATCATGACAGAGAAATCTGGGGTGAAGATTGCCATAACTTCAATCCAACAAGATTTAGCGAGCCTCGGAAACATTTAGCTGCATTCATTCCTTTTGGATTAGGCCCTCGAACTTGTGTTGGGCAAAATTTGGCAATGGTTGAGGCAAAGATTGCTCTTTCTTTGATCATTCAAAGTTACAGTTTTGTGCTATCTCCAAACTATGTTCATGCTCCTGTACTTTTTATCACTTTGCAGCCTCAGTGTGGGGCGCAAATCATTTTCAGAAGGATTTCATATTGA 819 0.3932 MRILVFEKRNNRFLPTRKNRERRRLEKETRESILKLIETKSNTGENARNVLSSLMCSYKNEVGGEEKLRVEEIIDECKTIYFAGKETTANLLTWTLLLLAKHQEWQSKAREEVLRVIKHNQLPVADNLSDLKIVSMIINETLRLYPPAVMLMRQASKDVMLGSINVPAKTQLYLALTAVHHDREIWGEDCHNFNPTRFSEPRKHLAAFIPFGLGPRTCVGQNLAMVEAKIALSLIIQSYSFVLSPNYVHAPVLFITLQPQCGAQIIFRRISY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5763g00004 272 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 211 220 IPR017972 GO:0005506|GO:0016705
Vium5763g00004 272 PRINTS E-class P450 group I signature 92 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS E-class P450 group I signature 72 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS E-class P450 group I signature 135 153 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS E-class P450 group I signature 208 218 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS E-class P450 group I signature 218 241 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 SUPERFAMILY Cytochrome P450 12 268 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 Pfam Cytochrome P450 10 245 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PANTHER CYTOCHROME P450 FAMILY MEMBER 9 262 - -
Vium5763g00004 272 Gene3D Cytochrome P450 3 269 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS P450 superfamily signature 83 100 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS P450 superfamily signature 136 147 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS P450 superfamily signature 218 229 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5763g00004 272 PRINTS P450 superfamily signature 209 218 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5763g00004 Vium-Chr5763 33040 34858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5763g00004 12 271 Cytochrome P450 AT1G75130 58.462 1.46e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5763g00004 - - vum:124841628 524.628