Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5761g00003 ATGCTTCAGATTCGGCTTAGCAGGGCTCCTGCATCAGAGGGGTCAGCAGGGGTGAAACAGTCACCTGTTGAGAATGTTACAGTTGCGTGCCCTGACCATCTGGTTCTTGCTGATCTTCCAGTTGCAAAGGGCATTGGTGCAGCCACGGCCACTTCTCTTGTGAAAACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGCGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCTGTAGCCATTTATGGACGCCTGAGCCCTTGTGAGCATGCCTTTTGTCTGGATTGTTCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATTTGTGCTGCCCCTCATTGTCTCAAATCTTTCTTAAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCATGCCAACCTTCTTCGACCCAATGCTGATAAAGAAGATGGAAATGACTCAGAAGCACAGAGTGTTAGGCAATCTACAGCTTCAGATTCCACTGCTAGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCGAATTCACAGCAACATGATCTGGAAGACAAATCTCGTAGACAGACACCTAGGGAGCAACCACCTTCAAGGCAAACCCTGCAGCCAAAGCCACCATATTACGGTCAACAACATCCTTCAGATACCATGTCTGGCTCTGTTGGAGGCGGACAACAGGGTTTTCATCAACAAAGTTTTGACATGCAGCAACCCCCACAAGAACCTTCCCAGTTTTCTGACGGGCAGCAAGTAGTGGGTCCAGAGACCCCATTTTCTGAGTATCCAACAATGCACCCCGGACAACCTTCCAATGTTCCCTCCCTGGTTACTTCAAACCCACTGTTGAACCCTCCTTTGCCATTAGGTTACCCCCCTTACCCAAATGAACGAGCTCAACCATTTTATGGTGCTCCCTATGATATGGCTAGGCCGGACTCAGGTGCTGATATGGGTGGGGAGCAGAGTTCACTATTGGGATTCCCTCAAGGTGCCCCAAATGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGAATTCAGGAATTGGTGGTATGCCTTTTGAACAAACACAGGGTGGTATGGTTGTGGATCCAAGGGAGGGCAAAGGCATATTGGCACCACAGCCCATGCGCCTCCCACCACCACCTCCGCCACCACCACATTTGAAACAAAACTACTATTCTGGGGAGATTGGGCATGATGGGCAGGGTTATGGGTGGCAGCATGATAACCGTGATGGCTTTGGTAGTCAGGGCTAG 1308 0.4939 MLQIRLSRAPASEGSAGVKQSPVENVTVACPDHLVLADLPVAKGIGAATATSLVKTLGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCSRSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNDSEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRQTPREQPPSRQTLQPKPPYYGQQHPSDTMSGSVGGGQQGFHQQSFDMQQPPQEPSQFSDGQQVVGPETPFSEYPTMHPGQPSNVPSLVTSNPLLNPPLPLGYPPYPNERAQPFYGAPYDMARPDSGADMGGEQSSLLGFPQGAPNGPNFPGNYPQPWNSGIGGMPFEQTQGGMVVDPREGKGILAPQPMRLPPPPPPPPHLKQNYYSGEIGHDGQGYGWQHDNRDGFGSQG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5761g00003 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 425 IPR040383 GO:0016567|GO:0061630
Vium5761g00003 435 MobiDBLite consensus disorder prediction 391 406 - -
Vium5761g00003 435 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Vium5761g00003 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Vium5761g00003 435 MobiDBLite consensus disorder prediction 209 269 - -
Vium5761g00003 435 MobiDBLite consensus disorder prediction 152 286 - -
Vium5761g00003 435 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Vium5761g00003 435 MobiDBLite consensus disorder prediction 330 435 - -
Vium5761g00003 435 MobiDBLite consensus disorder prediction 166 195 - -
Vium5761g00003 435 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5761g00003 Vium-Chr5761 2270 15618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5761g00003 1 434 C2H2 Transcription Factor Family AT5G01160 46.622 2.10e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5761g00003 K15685 - gmx:100817582 775.778