Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5757g00009 ATGGATGCTTCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGAAGTAGTGTATGATCCTATCCATCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTTGATAATCAAGTTCAGGCGCAATCAGAGGAGGTTTCTCATGGAATATTTGGAACATCTGTGAAGTACAACCAAGATCATAATAGACCGGTTGATAAGACACAAAGACGTCTTGCTCAAAATCGAGAGGCTGCTCGAAAGAGTCGTTTGAGGAGAAAGGCATACGTGCAACAGTTGGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAGCAATTTTTAAGATGGAGTACGAACATTGGGTAGAGGAGCAAAACAGACATATCTTGGAAATGAGAACAGCTTTAAGTTCTGAGATAGGTGACATGCAACTGGGGAACCTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTTAAGGTTCTGATCCCTCTGAGTGGACCTTTGACAGAGCAACAACTGTTTGATACCTATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCTCTTTCACAAGGAATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCGAGGACACTTAGTTGAAGGAACCCACATTCCACAGATGGATACTGCAATGGAGAGGTTGGAAGCTCTGGTGAGCTTTGTCAATCAGGCTGATCATCTACGACAAGAAACCTTGCGGCAAATGTATCGAATACTTAGCATACATGAGATTGGTCAGTTTCTGCTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGATCTCGAGAAGCACTTCCTTAG 1110 0.4171 MDASSSQFVSSRRMEVVYDPIHQISMWEENFKSNANTLTASTSIIEELDMKFDNQVQAQSEEVSHGIFGTSVKYNQDHNRPVDKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMQLEQEVDHAKRQGLYIGDGLGSNNLGFAGSVNSGIAIFKMEYEHWVEEQNRHILEMRTALSSEIGDMQLGNLVQSIMNHYSKLFSMKSAAAKADVFYVMSGMWMTTAERFFLWIGGFRPSELLKVLIPLSGPLTEQQLFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGRGHLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILSIHEIGQFLLVLGEYFQRLRALSKLWANRSREALP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5757g00009 369 Coils Coil 266 286 - -
Vium5757g00009 369 SUPERFAMILY Leucine zipper domain 84 125 IPR046347 GO:0003700|GO:0006355
Vium5757g00009 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Vium5757g00009 369 SMART brlzneu 80 140 IPR004827 GO:0003700|GO:0006355
Vium5757g00009 369 Pfam bZIP transcription factor 83 112 IPR004827 GO:0003700|GO:0006355
Vium5757g00009 369 Pfam Seed dormancy control 171 245 IPR025422 GO:0006351|GO:0043565
Vium5757g00009 369 PANTHER TRANSCRIPTION FACTOR TGA9 3 366 - -
Vium5757g00009 369 Coils Coil 103 130 - -
Vium5757g00009 369 Gene3D - 83 132 - -
Vium5757g00009 369 ProSiteProfiles DOG1 domain profile. 153 363 IPR025422 GO:0006351|GO:0043565
Vium5757g00009 369 FunFam BZIP family transcription factor 83 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5757g00009 Vium-Chr5757 117899 123668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5757g00009 1 366 Calmodulin-binding Proteins AT5G65210 61.622 1.78e-163 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium5757g00009 DOG1 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5757g00009 K14431 - gmx:100780003 617.846