Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5757g00006 ATGACAAGGTCTGTGTGTGAGTTCTTGTATGAGCTCTACGCCAAGACAATAGTCCTTGTAACATACATGCTAATACAACTTATCCTTATCATACGCTACCTTAAGTCAAACACACCTGCAATATCAACCACCCAATACCTCAGTTTCATCGAAGAGAAGAACCCCGCCATTCGTTACACCACAAGACTCAAGGCAGAGCACATAGACTGCAGAGTTTGTCTCTCTGAATTCCAGGAAGGGGAGAAGGTCAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGGCACAAGGTCTTGCCAGATCATGTTGTCGCCAACTACAACCTCCTTCAAAATCAGGTACAAGAAGAAGAAGAAGACTACGATGGCAATGATCACCAACTCATCTTTTTCTTATCTGCATTAAGGGGTGGTAGCACTTGGCACACATATCTCTGA 489 0.4479 MTRSVCEFLYELYAKTIVLVTYMLIQLILIIRYLKSNTPAISTTQYLSFIEEKNPAIRYTTRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNQVQEEEEDYDGNDHQLIFFLSALRGGSTWHTYL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5757g00006 162 SMART ring_2 70 111 IPR001841 -
Vium5757g00006 162 SUPERFAMILY RING/U-box 47 124 - -
Vium5757g00006 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 117 IPR013083 -
Vium5757g00006 162 PANTHER - 4 157 - -
Vium5757g00006 162 Pfam Ring finger domain 69 112 IPR001841 -
Vium5757g00006 162 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5757g00006 Vium-Chr5757 66872 67728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5757g00006 69 122 C3H Transcription Factor Family AT1G15100 57.407 5.35e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5757g00006 K16282 - gmx:102669811 263.848