Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5757g00001 ATGGCCACTACACTTGCTTGGAGACACGCTGGCAACAATGCAAATGATCTGGAAAGAAATGGTGATAGGAATACTCAAGATTCAGAGCCCGCAACTCCACATTCTGTTCTGAAGATGGGATTTAGAGAGCGTAACAGCAGCATGGAGGATCCAGATGGAACATTAGCTAGTGTTGCCCAATGCATTGAGCAGTTGCGTCAGAGCTCTTATTCTGTGCAGGAGAAAGAGTATTCCTTAAGACAGCTATTGGAGCTTATAGATATGCGGGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCAGGTCTGGTTCATTGAATGTAAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAACTAAAGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTCTATTAAAGTCCAGTTCTACCGAAGGACAAATTGCTGCTGCAAAGACTATTTATGCTGTTTCTCAAGGTGGTGTAAAGGATCATGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGGAGCAGCTTAAAACTGGTCTAAAGGCAGGAAATGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAACACTGAGGGATTCTGGAATGCAACTATACGAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGGCAAAAGGACAGCCCAGCAGTTTAGCAAATGTGTGCAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCGGAGGTGACAAAACAACTTCTGAAACTATTAGGCCCTGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGAAGCAAGGCGAGAGATAGCCAATGCTAATGGTATTCCTTCTCTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGAGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTGGCATCAGCTCTCATGATTTATGATACCAAGGCCGAATCAACCAGAGCATCAGATCCTTTGGTTGTCGAGCAGACATTACTCAAACAATTTGAACCTCGCTTGCCCTTCCTTGTGAAGGAACGGACCATTGAAGCACTTGCCAGTTTGTATGGAAATTCCGTACTTTCAAATAAACTTGCAAATGCGGATGCAAAACATCTGCTAGTTGGTTTGATAACAATGGCTGCAAATGAAGTGCAAGACGAGCTTATAAAAGCTCTGTTGACAGTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAGTGCGCAGTTGCCCTGCTTTGCCTTCTATCATTTGAAAATGATGAAAGTAAATGGGCGATTACTGCAGCTGGTGGCATACCTCCACTCGTTCAAATTTTGGAGACAGGATCAGCTAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGCGAAGATATACGCGCTTGTGTTGAAAGTGCCGATGCTGTTCCTGCATTATTGTGGCTATTGAAAAATGGAAGCCCAAATGGGAAGGATATTGCTGCAAAAACTTTAAATCATTTAATTCATAAATCGGATACTACAACCATTAGTCAGCTTACAGCTTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGACGCTTTAAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGACATTTTACGTGAAGGTAGTGCTGCCAGCGATGCATTTGATACTATGATAATATTATTGGGCTCTGCCAAAGAAGAAACTCAGGCAAAGTCTGCATCGGCTCTGGCAGGAGTTTTTGAAACAAGGAAAGATGTGCGTGAAAGTAGCATTGCCGTCAAAACTCTTTTGTCAGCCAAGAAATTGCTCAATGCTGAATCTGAAAGTATCCTGATTGAGTCCTCCCACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTACTATCGCCAGAGACACATTATCCCCTCTAGTTTCACTAGCAAATTCTTCAGTTTTGGAAGTTGCAGAGATGGCCACATGTGCTCTGGCAAACCTTATTTTGGATGGTGAAGTTGCAGAGAAAGCTATTGCAGAAGAAGTTATCTTACCTGCCACTAGAATATTATGTGAAGGCACAATTTCGGGAAAAACTCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGGGCTGTAGATTATGCTGTAACTGATTGTGTGAATCGTGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTGTCAATGGATCTGTTGCTACATCGGAGGCTCTAGAAGCACTTGCCATACTGTCCAGGTCGGTAGAGACCAGAGAAAATATTAAATCTGCTTGTGCTGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCTTGTGTATTGTTGATTCGGAGCCAATGTTGCAGGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGATCAGCCTGTTGTTTTAGGAGAGACTATTGTGTCAGCACCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAATGTAAAGGTCAAAATTGGGGGAGCAGCGCTCCTTATTTGTACTTCTAAAGCAAATCATCAGAGACTGGTGGAAGATCTGAGTTCATCGAATTTGTGTTTTGATCTTATTCGATCTCTTGTTGATATTCTTGTTTCTGCAGTGCCTTCTTCGGGTTACCTGGATGGTGACAACCAGGAGCTCATTAGCATATGCAGGCACATAACAGAAGAGGCCAACAGTTCTGAATCCAACACTAGCACTAGCTTTATCTGTGGTGTTGACTTGGCGCTATGGCTACTGTCTATTCTTGCTTGTAATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCATCGACAGAATCTCGAATTGTTTCTCGCAATATTCTCAGATTGACTACAAAGAAGATAGCGTCATGTGGATTCATGCTTTGTTGTTGGCGATATTGTTTCAAAATAGAGATATCATACGGGCACATCCAACTATGAAATCTGTACCAGCACTTACCAGTTTAATGAAATCAGAGCCATCAGCAAACAAATATTTTGCTGCACAATCTATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTCCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTGTTTCGAGTTGAAGATATAAGAGTTGGAGCCACTTCTCGGAAGGCTATACCAGCCTTAGTTGATCTGCTCAAACCAATTCCAGATCGTCCAGGGGCACCCTTTTTGGCACTTGTACTTTTGACTCAGCTCGGTAAAGATTGCCCTTCAAATATGAGTGTAATGGTGGAGTCTGGGGCCTTAGAAGCACTTACGAAGTATCTTTCACTCAGTCCGCAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGTGCTGAAATAAGAAGACACGAATCAGCATTTGGCGCTGTTGCTCAACTTATAGCTGTGCTACGGTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTTTCTGCTGATCACATCAGAAATGCAGAGATTGCTCGGCAGGCTGTTCAACCATTGGTGGAGATTCTCAGTACTGGTTCAGAAAAGGAGCAGCATGCTGCCATTGCTGCATTGGTGGGGTTACTGAGTGAAAATCCATCAAGAGCTCTTGCTGTTGCAGATGTTGAGAAGAATGCAGTGGAAGTTCTTTGTAGGATCCTTTCATCAAGTTGTTCAATGGATCTGAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGCTCCACAGCAGCTGCTGCAAGTTGTGTTGAACCTCTTGTCTCTCTCCTTGTATCTGAGTTCAGTCCAGCTCAGCTTTCAGTTGTCAGGGCACTGGATAGGCTTGTTGATGATGAGCAACTGGCGGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTGTCGGGTACAAATTATATACTACATGAGGCCATTTCCAGAGCTCTAGTCAAGTTGGGAAAAGACAGGCCTGCTTGTAAAATGGAGATGGTTAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACATGAAGCACCCGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACTAATAATGCTAGTATAGCTAAAGGACCATCTGCTGGTAAAGTGGTTGAACCATTGTTTTTGTTACTGACAAGGCAGGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCAAAGTGTCGTGCTGACCATTCATTAACTTCTCGCCAAGTTATTGAACCACTTATCCCTTTGCTCGATTCTTCAATTTCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTCTCGAAGAACGCCTTCAGAAGGATCCTGTGACACAGCAAGCAATTGGCCCTCTCATTCGAGTTCTTGGTTCTGGTATACACATACTGCAGCAGAGAGCTGTAAAAGCCCTTGTTAGTATTGCACTAACATGGCCAAACGAAATTGCTAAAGAGGGTGGTGTCATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCACGCTTTATGGGAGTCTGCTGCCTCCGTTTTGTCTAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTATTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTGTTGGTGCTTTAAATGCTCTTTTGGTGCTAGAAAACGATGATGGAACTAGTGCAGAAGCTATGTCGGAAAGTGGAGCTATAGAGGCTCTCTTGGAGCTCCTGCGATCTCATCAGTGTGAGGAAACTGCCGCAAGACTTTTAGAAGTATTGCTGAACAATGTAAAGATTCGAGAAACAAAAGTAACAAAATCAGCTATCGTACCACTATCGCAGTACCTTTTGGACCCACAAACTCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTCGGGGATCTGTTTCAGAATGAGGGCCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTAAACGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTATAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTAATCCAGAAACATCAGTTCAGGCTGCGATGTTTGTTAAACTTTTATTCTCAAATAATACTATTCAAGAGTATGCTTCCAGTGAAACAGTCAGAGCGATAACTGCTGCTATTGAAAAAGATTTATGGGCTTCTGGAACTGTGAATGACGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTTAGAGCAACTGAACCATCGACACTTAGCATTCCCCATCTGGTTACAGCCTTAAAGACAGGTTCAGAAGCGTGTCAGGAAGCAGCATTAGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCACTGCTGCAGTACTTAATACAGTCTGGGCCACCTCGGTTTCAGGAGAAAGCAGAATTTTTGTTGCAGTGTTTGCCGGGGACATTGGTAGTGATCATCAAACGTGGTAACAATATGAAACAATCCGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTCGGCAACACTCCCCCAAGGCAAACCCAGGTGGTTTCAACTGGCCCTAATCCAGAGTGGGATGAGAGCTTTTCATGGACCTTTGAGAGTCCTCCCAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTCGGGAAAGTAACAATCCAGATTGATCGAGTGGTAATGCTTGGATCAGTGGCCGGAGAGTACGCTTTGTTGCCTCAAAGTAAAAGTGGGCCGCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6441 0.4315 MATTLAWRHAGNNANDLERNGDRNTQDSEPATPHSVLKMGFRERNSSMEDPDGTLASVAQCIEQLRQSSYSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELKVKVLLGGCIPPLLSLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNATIRAGGVDILVKLLAKGQPSSLANVCNLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANANGIPSLINATIAPSKEFMQGECAQALQENAMSALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDTKAESTRASDPLVVEQTLLKQFEPRLPFLVKERTIEALASLYGNSVLSNKLANADAKHLLVGLITMAANEVQDELIKALLTVCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSFENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSAASDAFDTMIILLGSAKEETQAKSASALAGVFETRKDVRESSIAVKTLLSAKKLLNAESESILIESSHCLAAIFLSIKENRDVATIARDTLSPLVSLANSSVLEVAEMATCALANLILDGEVAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSRAVDYAVTDCVNRAGTVLALVSFLDSAVNGSVATSEALEALAILSRSVETRENIKSACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGETIVSAPGCISSIAKRIISSTNVKVKIGGAALLICTSKANHQRLVEDLSSSNLCFDLIRSLVDILVSAVPSSGYLDGDNQELISICRHITEEANSSESNTSTSFICGVDLALWLLSILACNDEKNKIAIMEAGAIDVLIDRISNCFSQYSQIDYKEDSVMWIHALLLAILFQNRDIIRAHPTMKSVPALTSLMKSEPSANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALVLLTQLGKDCPSNMSVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRRHESAFGAVAQLIAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALVGLLSENPSRALAVADVEKNAVEVLCRILSSSCSMDLKGDAAELCCALFGNTRIRSTAAAASCVEPLVSLLVSEFSPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLSGTNYILHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGPSAGKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPKCRADHSLTSRQVIEPLIPLLDSSISAVQQLAAELLSHLLLEERLQKDPVTQQAIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLENDDGTSAEAMSESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNDEYLKALNSLFSNFPRLRATEPSTLSIPHLVTALKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWTFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK 2146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5757g00001 2146 Gene3D - 1521 1695 IPR011989 -
Vium5757g00001 2146 SUPERFAMILY ARM repeat 1179 1441 IPR016024 -
Vium5757g00001 2146 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 24 2146 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vium5757g00001 2146 SUPERFAMILY ARM repeat 1402 1651 IPR016024 -
Vium5757g00001 2146 SMART C2_3c 2026 2122 IPR000008 -
Vium5757g00001 2146 Gene3D - 1696 1811 IPR011989 -
Vium5757g00001 2146 ProSiteProfiles C2 domain profile. 2006 2123 IPR000008 -
Vium5757g00001 2146 Coils Coil 292 319 - -
Vium5757g00001 2146 Gene3D - 43 411 IPR011989 -
Vium5757g00001 2146 Gene3D - 412 646 IPR011989 -
Vium5757g00001 2146 Gene3D - 1812 2021 IPR011989 -
Vium5757g00001 2146 SMART arm_5 89 130 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 728 766 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 562 602 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1564 1602 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 520 560 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1224 1265 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 477 518 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1434 1474 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 306 355 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1307 1347 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1725 1764 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 812 854 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1852 1892 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 131 171 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1476 1516 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 1393 1433 IPR000225 GO:0005515
Vium5757g00001 2146 SMART arm_5 263 304 IPR000225 GO:0005515
Vium5757g00001 2146 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Vium5757g00001 2146 Gene3D - 873 1357 IPR011989 -
Vium5757g00001 2146 Gene3D - 647 872 IPR011989 -
Vium5757g00001 2146 SUPERFAMILY ARM repeat 60 388 IPR016024 -
Vium5757g00001 2146 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2025 2146 - -
Vium5757g00001 2146 FunFam Coatomer beta subunit 1611 2024 - -
Vium5757g00001 2146 SUPERFAMILY ARM repeat 1672 2023 IPR016024 -
Vium5757g00001 2146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2025 2128 IPR035892 -
Vium5757g00001 2146 MobiDBLite consensus disorder prediction 1 36 - -
Vium5757g00001 2146 SUPERFAMILY ARM repeat 1020 1155 IPR016024 -
Vium5757g00001 2146 Gene3D - 1358 1520 IPR011989 -
Vium5757g00001 2146 CDD C2 2027 2117 - -
Vium5757g00001 2146 Gene3D C2 domain 2023 2146 IPR035892 -
Vium5757g00001 2146 SUPERFAMILY ARM repeat 701 988 IPR016024 -
Vium5757g00001 2146 SUPERFAMILY ARM repeat 48 789 IPR016024 -
Vium5757g00001 2146 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1375 1609 - -
Vium5757g00001 2146 Pfam Armadillo/beta-catenin-like repeat 520 559 IPR000225 GO:0005515
Vium5757g00001 2146 Pfam Armadillo/beta-catenin-like repeat 99 129 IPR000225 GO:0005515
Vium5757g00001 2146 Pfam C2 domain 2025 2114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5757g00001 Vium-Chr5757 4410 15543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5757g00001 491 615 U-box Gene Family AT3G46510 32.540 3.72e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5757g00001 - - gmx:100794002 3821.17