Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5753g00004 | ATGGACACAGTTCAGTGCCCTCAGGAGATGGTGGTGAAACCAATGGAAGATATAGCAGCGACTAATACATGTCCGAAGGTTGCAGGTGCTGTGGAAAGGAAGCCAATGCCACAGAAAGAACAACCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTCGCTATTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCCAGGAAGAACAAAAGATCTTCTACTTTTTCTTCCACTCCTCACAATAATTCACCAGATAATAAGAAGCTTCCTGATCTGGTAATCGCACCACACTCTCAAAACCCTAAGAATAACATTCATCAAGGTCAAGATCTCAATCTGGGTTTCCCAGCCACAACCCCAGATTTCAGAAACATTTCTGAATTGGTTCGGCAAAACAACAACAATAGTAGCAACAACAACATGTCTGCTTCGGCTTCTTCTTCTTCTTCAACTACCTCTATCACCACTCCTACAATTTCACACCTTTCTGCATTGGAGCTTCTCACTGGAATCACTTCAACTTCCACCGGCTTCAATTCCTTCATGCCTGTTCCCGTTCCAGCCGATCCAAATCCTTCCTACGCATGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTGGATCACGGGTACGCCAGCCTGCATAATATTCAAAGTGGGAGGCTCTTGTTTCCATTTGAGGACTTAAAACAGGTTTCCACTACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACCGGGTATTGGACTGGAATGTTTGGCGGAGGATCATGA | 867 | 0.4475 | MDTVQCPQEMVVKPMEDIAATNTCPKVAGAVERKPMPQKEQPLNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSTFSSTPHNNSPDNKKLPDLVIAPHSQNPKNNIHQGQDLNLGFPATTPDFRNISELVRQNNNNSSNNNMSASASSSSSTTSITTPTISHLSALELLTGITSTSTGFNSFMPVPVPADPNPSYACGFPLQDFKPTLNFSLDHGYASLHNIQSGRLLFPFEDLKQVSTTTTMDQKQQGDSTGYWTGMFGGGS | 288 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5753g00004 | 288 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 33 | 174 | IPR045174 | GO:0003700|GO:0006355 | |
Vium5753g00004 | 288 | Pfam | Dof domain, zinc finger | 41 | 97 | IPR003851 | GO:0003677|GO:0006355 | |
Vium5753g00004 | 288 | MobiDBLite | consensus disorder prediction | 84 | 117 | - | - | |
Vium5753g00004 | 288 | ProSiteProfiles | Zinc finger Dof-type profile. | 43 | 97 | IPR003851 | GO:0003677|GO:0006355 | |
Vium5753g00004 | 288 | ProSitePatterns | Zinc finger Dof-type signature. | 45 | 81 | IPR003851 | GO:0003677|GO:0006355 | |
Vium5753g00004 | 288 | MobiDBLite | consensus disorder prediction | 157 | 178 | - | - | |
Vium5753g00004 | 288 | MobiDBLite | consensus disorder prediction | 92 | 111 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5753g00004 | Vium-Chr5753 | 26376 | 28312 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5753g00004 | 1 | 288 | C2C2-Dof Transcription Factor Family | AT4G24060 | 42.735 | 3.60e-58 | 187 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Vium5753g00004 | zf-Dof | 4.8e-33 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5753g00004 | - | - | pvu:PHAVU_001G080800g | 479.944 |