Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5753g00003 ATGGACACAGTTCAGTGCCCTCAGGAGATGGTGGTGAAACCAATGGAAGATATAGCAGCGACTAATACATGTCCGAAGGTTGCAGGTGCTGTGGAAAGGAAGCCAATGCCACAGAAAGAACAACCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTCGCTATTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCCAGGAAGAACAAAAGATCTTCTACTTTTTCTTCCACTCCTCACAATAATTCACCAGATAATAAGAAGCTTCCTGATCTGGTAATCGCACCACACTCTCAAAACCCTAAGAATAACATTCATCAAGGTCAAGATCTCAATCTGGGTTTCCCAGCCACAACCCCAGATTTCAGAAACATTTCTGAATTGGTTCGGCAAAACAACAACAATAGTAGCAACAACAACATGTCTGCTTCGGCTTCTTCTTCTTCTTCAACTACCTCTATCACCACTCCTACAATTTCACACCTTTCTGCATTGGAGCTTCTCACTGGAATCACTTCAACTTCCACCGGCTTCAATTCCTTCATGCCTGTTCCCGTTCCAGCCGATCCAAATCCTTCCTACGCATGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTGGATCACGGGTACGCCAGCCTGCATAATATTCAAAGTGGGAGGCTCTTGTTTCCATTTGAGGACTTAAAACAGGTTTCCACTACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACCGGGTATTGGACTGGAATGTTTGGCGGAGGATCATGGTAA 870 0.4471 MDTVQCPQEMVVKPMEDIAATNTCPKVAGAVERKPMPQKEQPLNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSTFSSTPHNNSPDNKKLPDLVIAPHSQNPKNNIHQGQDLNLGFPATTPDFRNISELVRQNNNNSSNNNMSASASSSSSTTSITTPTISHLSALELLTGITSTSTGFNSFMPVPVPADPNPSYACGFPLQDFKPTLNFSLDHGYASLHNIQSGRLLFPFEDLKQVSTTTTMDQKQQGDSTGYWTGMFGGGSW 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5753g00003 289 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Vium5753g00003 289 MobiDBLite consensus disorder prediction 84 117 - -
Vium5753g00003 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 175 IPR045174 GO:0003700|GO:0006355
Vium5753g00003 289 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Vium5753g00003 289 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Vium5753g00003 289 MobiDBLite consensus disorder prediction 92 111 - -
Vium5753g00003 289 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5753g00003 Vium-Chr5753 26376 28315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5753g00003 1 289 C2C2-Dof Transcription Factor Family AT4G24060 42.898 1.22e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium5753g00003 zf-Dof 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5753g00003 - - pvu:PHAVU_001G080800g 479.944