Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5752g00004 ATGGCTGCAACACCAGGACTGGAGCATTCTAGGAATGCTTTTGGATGGGCTGCTAGAGACAAATCTGGGGTTCTCTCCCCCTTCGACTTTACCAGAAGGGAGACAGGAGAGAAAGATGTGGCAATCAAAGTGTTATTCTGTGGTATATGCCACACTGACCTCCACGTTATTAGGAGTGACTGGGGTGAGTCCACTTATCCACTGATACCCGGGCACGAGATTGCCGGTGAAGTGATAGAGGTTGGAAGCAAGGTACAGAAGCACAAGGTGGGAGATAGGGTGGGTGTGGGGTGCATGGTTAATTCCTGTAGGTCGTGCAAAAGCTGCGACGAGGATCTTGAGAATTACTGCTCAAAAACGATTCAGACTTATGGAGCGAAGGATCTTGATGGGAGCATCACACAAGGAGGCTACTCTGATCTGGTGGTTGTAGATGAACACTTTGTGATCAGCATTCCTGATAACCTGCCTCTTGAGGCTGCTGGTCCTCTCTTATGTGCTGGGATCACAGTTTATAGCCCTCTCCGATATTTTGGAATAGACAAACCAGGCCTGCATGTGGGTGTGGTTGGTCTTGGTGGCCTTGGTCATATGGCTGTTAAGTTTGCCAAAGCTTTTGGAGCTAAGGTCACTGTAATCAGCACATCTCCAAACAAAAAGAAGGAAGCTATTGAGCATCTTGGAGCTGATTCATTTTTGGTCAGTCGTAATCCAGAGGAGTTGGAGGCTGCAAAGGGCACCCTGGATGGTATAATAGACACAGTGTCTGCAGTTCACTCTCTGGTCCCTCTGGTTGATTTGTTGAAGACTGGTGGGAAACATGTCATTGTTGGTGTACCTGATAAGCCTTTGGAGCTACCCATCTTTCCTTTACTAGCGAGAAAGAGTGTTGCTGCCAGTAACATTGGAGGAATAAAGGAGACTCAAGAGATGCTTAATTATTGTGCCAAACACGATATACAGCCTGACATTGAGATTATTCCTGTTGATTATGTAAACACGGCAATGCAGCGTCTCGTCAAAGCAGATGTCAAATATCGATTTGTTATTGACATTGGGAACACACTGAAGCCCAGCTCTTAA 1083 0.4654 MAATPGLEHSRNAFGWAARDKSGVLSPFDFTRRETGEKDVAIKVLFCGICHTDLHVIRSDWGESTYPLIPGHEIAGEVIEVGSKVQKHKVGDRVGVGCMVNSCRSCKSCDEDLENYCSKTIQTYGAKDLDGSITQGGYSDLVVVDEHFVISIPDNLPLEAAGPLLCAGITVYSPLRYFGIDKPGLHVGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKKKEAIEHLGADSFLVSRNPEELEAAKGTLDGIIDTVSAVHSLVPLVDLLKTGGKHVIVGVPDKPLELPIFPLLARKSVAASNIGGIKETQEMLNYCAKHDIQPDIEIIPVDYVNTAMQRLVKADVKYRFVIDIGNTLKPSS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5752g00004 360 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Vium5752g00004 360 FunFam Cinnamyl alcohol dehydrogenase 167 322 - -
Vium5752g00004 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vium5752g00004 360 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Vium5752g00004 360 FunFam Putative cinnamyl alcohol dehydrogenase 6 323 352 - -
Vium5752g00004 360 PANTHER ALDEHYDE REDUCTASE 8 355 IPR047109 GO:0016616
Vium5752g00004 360 Gene3D - 16 352 - -
Vium5752g00004 360 SUPERFAMILY GroES-like 19 184 IPR011032 -
Vium5752g00004 360 CDD CAD1 14 351 IPR047109 GO:0016616
Vium5752g00004 360 Pfam Zinc-binding dehydrogenase 194 314 IPR013149 -
Vium5752g00004 360 FunFam Uncharacterized protein 16 166 - -
Vium5752g00004 360 Gene3D - 167 322 - -
Vium5752g00004 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 320 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5752g00004 Vium-Chr5752 39922 46044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5752g00004 10 359 Monolignol Biosynthesis Gene Families AT4G37990 68.376 4.17e-165 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5752g00004 K23232 - qsa:O6P43_025192 544.273