Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5752g00003 ATGCTTCGTGGCACCGTTGCCAATGGTAGGCGAAGGCCCCTCTCACGATGGTTAGATGCAAAGCAGGTTGTTGCCCCCAAGTCCAAGGCATCTTCTTGGGCTTTTGTACAGAGGAGACAGGTTTTCCGGGTGGAACATGCGTTTGCTGGAATCTACAAAAGGAGTTTAAGTGAGTTCAAAGGTTCTGACGTAGCCTTTAATAATCCTGAAGTCAAATTGCATATAGAAAACAAGCAGATCACAGTGCAAAATGGCATCATTCGTGTAACTTTCTCAAATCCGGAGGGCACTATCCTTGGAATTTCATATAATGGAATAAAAAATGTGCTTGAAGGTCGCAATAACTTCAACAACAGAGGGTATTTTGACATTGTCTGGAATTCACCTGGAGCCCCTTCAAAACTTTGGGGAATTGAAGGGAGTAGATTTTCAGTTATAGAGGCCAACAAGAATGAAGTAGAACTTTCGTTTTCCAGAACGTGGAACAAGGACAACTCAAGTCCTCCCTTAAACATAGACAAAAGATATATTTTACGAAGAGGTAGTTCAGGATTATACATATATGGTATATTTGAGCATCCTGAAGATTTTCCTGCAACGGAGATTGATCACATTAGGATTGTTTTCAAGCTGCAGAAGGAGAGGTTCCACTACATGGCTATAGCAGATGATAGGCAGCGAGTCATGCCAACAGCAGAAGATAGATCTACAGGGCAACGCCTTGATTATGATGAAGCTGCTCTAATCACCAATCCTAGTAACCCTCAGCTTCAAGGAGAGGTTGATGACAAATATCAATACTCTTGTGAGAACAAAGACAACAAAGTTCATGGGTGGATTAACTTGGACTTCAAGAACAATAAGTCAGTGGGCTTTTGGATGATCACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAGGCAAGGCCTTACTTCTCATGTTGGCCCTGTCACTCTTAATATACTCCATACCACTCACTACTCTGGGAAGGAAGTAACCATGACATTACACGAAGGAGAACCCTTCAAGAAAGTATATGGTCCCGTTTTTGCTTATCTTAACTCAGTTTCAAGGGTTCATCATTCAGAACAAGTCCTCTGGAGTGATGCCGTACAACAGCTATCAAAGGAAATCAATAGATGGCCTTATGATTTCCCTAAATCAGAGGATTTTGTCCCTACAAATAAAAGGGGAAGAGTGGAAGGACAATTACTCGTCCAAGACAGACACATTAAAGGAGGCACATTTTTATATGGCGAAAATGCCCATATTGGTTTGGCACTTCCCGGAGACGTGGGATCATGGCAGAGACAAAGCAAGGGTTACCAATTCTGGACTCATGCTGCTAAACTTGGCCACTTCGCTATAGCAAATATTGTACCAGGGGACTACAATTTATATGCATGGATTCCTGGAGTTTTTGGAGACTATAAATATAACACTACCATAACCATAACACCAGGATGTATCATCCAATTGGGTTCACTCATATACAATCCTCCAAGAACTGGACCAACCTTATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTCATAAACCGATTATACATAGCAAAACCATTGCACAAGTTTAGACAATATGGATTATGGAAGCGTTACAACGAGTTATATCCAAATGAGGACCTCACTTACACTGTTGGCGTGAGTGATTATAGTAAAGATTGGTTTTATGCTCAAGTTCCCAGGAACATTGGAAACAACTCATATCATCCAACAGTATGGGAGATTAAATTTCATCTCCCATTTGTTATGAGAGGCATCTACACACTGCGACTTGCTTTGGCCTCAGCTACACGTTCTAACTTGATGGTTAGGTTCAACAACCCTGTGGCTCGTCCTCCACATTTTTCTACGGGATTAATAGGTCAAGATAATGCAATAGCAAGACATGGCATCCATGGATTGTATTGGCCTTATAGTATTGAAGTAGGAAGCAATGTATTGGTGGAAGGAAGCAACACCATCTATCTTAGACAAACAAAAGGTATGAGTCCTTTTCAAGGCATTATGTATGACTACATCCGTTTTGAAAGACCAGAAGCATAG 2103 0.4161 MLRGTVANGRRRPLSRWLDAKQVVAPKSKASSWAFVQRRQVFRVEHAFAGIYKRSLSEFKGSDVAFNNPEVKLHIENKQITVQNGIIRVTFSNPEGTILGISYNGIKNVLEGRNNFNNRGYFDIVWNSPGAPSKLWGIEGSRFSVIEANKNEVELSFSRTWNKDNSSPPLNIDKRYILRRGSSGLYIYGIFEHPEDFPATEIDHIRIVFKLQKERFHYMAIADDRQRVMPTAEDRSTGQRLDYDEAALITNPSNPQLQGEVDDKYQYSCENKDNKVHGWINLDFKNNKSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYSGKEVTMTLHEGEPFKKVYGPVFAYLNSVSRVHHSEQVLWSDAVQQLSKEINRWPYDFPKSEDFVPTNKRGRVEGQLLVQDRHIKGGTFLYGENAHIGLALPGDVGSWQRQSKGYQFWTHAAKLGHFAIANIVPGDYNLYAWIPGVFGDYKYNTTITITPGCIIQLGSLIYNPPRTGPTLWEIGIPDRSAAEFHVPNPYPNLINRLYIAKPLHKFRQYGLWKRYNELYPNEDLTYTVGVSDYSKDWFYAQVPRNIGNNSYHPTVWEIKFHLPFVMRGIYTLRLALASATRSNLMVRFNNPVARPPHFSTGLIGQDNAIARHGIHGLYWPYSIEVGSNVLVEGSNTIYLRQTKGMSPFQGIMYDYIRFERPEA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5752g00003 700 SUPERFAMILY Galactose-binding domain-like 505 696 IPR008979 -
Vium5752g00003 700 CDD RGL4_M 397 497 IPR029413 -
Vium5752g00003 700 CDD RGL4_C 509 696 - -
Vium5752g00003 700 CDD RGL4_N 71 358 - -
Vium5752g00003 700 Gene3D - 504 696 - -
Vium5752g00003 700 Gene3D - 72 353 IPR014718 GO:0030246
Vium5752g00003 700 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 76 699 - -
Vium5752g00003 700 SUPERFAMILY Galactose mutarotase-like 78 371 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vium5752g00003 700 Pfam Rhamnogalacturonate lyase family 69 261 IPR010325 -
Vium5752g00003 700 Gene3D - 393 493 - -
Vium5752g00003 700 Pfam Polysaccharide lyase family 4, domain II 422 493 IPR029413 -
Vium5752g00003 700 Pfam Polysaccharide lyase family 4, domain III 507 694 IPR029411 -
Vium5752g00003 700 SUPERFAMILY Starch-binding domain-like 394 494 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5752g00003 Vium-Chr5752 18885 26851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5752g00003 71 698 Polysaccharide Lyase AT1G09910 53.712 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5752g00003 K18195 - gmx:100792575 1093.57