Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5752g00002 ATGAAGGGGAAGAGCCAAAAGGTTTTCTTGCTTTTCTGGTTTGGAATGACCCTACGCTTGTTTTTCTTACTTGGTGCCTGTTGCGAGAAGACAACAAGAAAAACTATGAGGCAAAGCCCCCCCACTCAACAGACAACTTCTAAGTCTGGGGTCATTCTGAATACAAAGAACAGTCAACAGGTGGTGGTTGACAATGGCATTGTTTCCGTCAATTTTTCAAGACCTAAGGGTTACACCCTTGGAATGTCATACAAAGGAATTGACAATATACTCGAAGACGATAACGAAGAACAAGATAGAGGGTACCTTGATGTCGTTTGGAATATGCCACCATCAAAGAATAGTACTTTTGAGAGAATCTTCGGGACAAATTTTACGGTTATAGCAAATGACGACAATTTCGTTGAGCTCTCATTTTTAAGAACATGGAATTCGTCCATGAAAGGCTCGAGTGTCCCTATGAACATTGACATAAGATACATTTTGCGAAGTGGTGATTCCGGATTTTATGCATATGCAATATTTGATCGTCCTGAAGGATGGCCTGCGGTGGAGATTGACCAAATTAGGATCGTTTTCAAACTCCAATCCAAATTCAACTATATGGCAATATCGGATGAAAGGCAAAGAAACATGCCAACGAAGAAAGATAGAGAAACTGGTCAAGAATTGGCATACCCCGAAGCAGTTCTGTTAACGAAACCAGCCAATCCAGAATTTAGAGGAGAGGTGGATGACAAATACCAGTACTCAAGTGAAAACAAGGATAGCACTGTTCATGGATGGGTGAGTGTTGATGCCGATGCACCCGTGGGTTTCTGGATGATAACCCCAAGCAACGAGTTCCGCAATGCTGGCCCCATCAAGCAAGACCTTACTTCACATGTTGGCCCCATTACCCTCTCGATGTTTGTGAGCACTCACTATGCTGGCAAGGAGTCAACCATGTCCTTTAAAGAAGGGGAGACTTACAAAAAAGTTTTCGGCCCTGTGTTCGTCTACGTTAACTCTGCTTCAGGCGATGATGGTACACTATCCCTCTGGTCAGACGCTGTGCAGCAGCAAGCCAAAGAAGTCAGAAGTTGGCCGTACGAATTTCCTAAATCAGTGGATTTCGTTCCACCCAGTGAAAGGGGAATAGTTTTGGGAAGATTACTAGTGAAAGATAGTTACTACAGAGGAGGTAAAGTTGTGTATGCTGACAATGCTTACGTTGGTCTAGCTTTACCTGGAGAAACAGGGTCATGGCAAAAAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCTGATACAAAAGGTTTTTTCCTGATAAATAATATTGTGCCCGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATATAATGTTACAATCACCATCAAAAAGGGAGGAGTCATCACATTGGATTCACTTGTGTTTGTTCCACCAAGAAGCGGACCAACCTTGTGGGAAATTGGGTTCCCAGATCGCACGGCTGCAGAATTCTATATACCAGACCCTTACCCTACGCTCATGAATAAATTATACAACAAAAGGCCCAATGACAAGTTTAGGCAATATGGGTTGTGGGATCGTTACACTGATTTATATCCAAATGATGATCTTGTTTTCACTGTTGGTAAAAGCAAGTATGACAAGGATTGGTTTTTCGCTCACGTTTCAAGAATCGCAGGAAACAAGACATTCCAGCCAACGACATGGCAGATTGTATTTGATCATCCAAATGAAGTAGAAAATGGAAACTACACATTGCAACTGGCATTGGCATGTACCAGTGATGCTAACCTGCAGATTCGTTTCAATGACGCTGGAGCAAAAAACCCAGACTTTGGAACTGGGAAAATCGGAGCAGATAGTGCGATAGCAAGGCATGGTGTGCATGGTTTGCATAGGCTATTCAGCATCGGTGTAAAAAGTAGTCGAATTGTGAAAGGAAAGAACACGATCTATTTGAAGCAGGCAAGAGCCAAGAATGCTTATCAAGGAGTAATGTATGATTATATCCGTTTAGAAGGACCTCCATCGACAGGGAAATGA 2055 0.4263 MKGKSQKVFLLFWFGMTLRLFFLLGACCEKTTRKTMRQSPPTQQTTSKSGVILNTKNSQQVVVDNGIVSVNFSRPKGYTLGMSYKGIDNILEDDNEEQDRGYLDVVWNMPPSKNSTFERIFGTNFTVIANDDNFVELSFLRTWNSSMKGSSVPMNIDIRYILRSGDSGFYAYAIFDRPEGWPAVEIDQIRIVFKLQSKFNYMAISDERQRNMPTKKDRETGQELAYPEAVLLTKPANPEFRGEVDDKYQYSSENKDSTVHGWVSVDADAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKESTMSFKEGETYKKVFGPVFVYVNSASGDDGTLSLWSDAVQQQAKEVRSWPYEFPKSVDFVPPSERGIVLGRLLVKDSYYRGGKVVYADNAYVGLALPGETGSWQKESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNVTITIKKGGVITLDSLVFVPPRSGPTLWEIGFPDRTAAEFYIPDPYPTLMNKLYNKRPNDKFRQYGLWDRYTDLYPNDDLVFTVGKSKYDKDWFFAHVSRIAGNKTFQPTTWQIVFDHPNEVENGNYTLQLALACTSDANLQIRFNDAGAKNPDFGTGKIGADSAIARHGVHGLHRLFSIGVKSSRIVKGKNTIYLKQARAKNAYQGVMYDYIRLEGPPSTGK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5752g00002 684 CDD RGL4_N 54 342 - -
Vium5752g00002 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 680 - -
Vium5752g00002 684 SUPERFAMILY Starch-binding domain-like 373 477 IPR013784 GO:0030246
Vium5752g00002 684 Gene3D - 52 350 IPR014718 GO:0030246
Vium5752g00002 684 CDD RGL4_M 377 477 IPR029413 -
Vium5752g00002 684 SUPERFAMILY Galactose-binding domain-like 484 677 IPR008979 -
Vium5752g00002 684 Gene3D - 373 476 - -
Vium5752g00002 684 Pfam Rhamnogalacturonate lyase family 42 244 IPR010325 -
Vium5752g00002 684 FunFam Rhamnogalacturonate lyase B 374 474 - -
Vium5752g00002 684 SUPERFAMILY Galactose mutarotase-like 54 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vium5752g00002 684 Pfam Polysaccharide lyase family 4, domain II 401 473 IPR029413 -
Vium5752g00002 684 CDD RGL4_C 489 677 - -
Vium5752g00002 684 Pfam Polysaccharide lyase family 4, domain III 487 676 IPR029411 -
Vium5752g00002 684 Gene3D - 484 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5752g00002 Vium-Chr5752 9946 15988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5752g00002 60 679 Polysaccharide Lyase AT1G09890 54.487 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5752g00002 K18195 - gmx:100776664 1114.37