Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5748g00002 ATGGCTGCTCTCTCTAATGGCAACCAAGCTTCTTCCTTCAAAATTCCTCCCATCAAGTTCACCAAACTCTTCATCAATGGACAATTTGTTGATTCCCTTTCAGGAAAAGAGTTTGAGACAATAGACCCAAGGACAGGGGAATTGATTACGAAGATCGCAGAGGGAGGAAAAGAAGACATTGACGTTGCTGTGAAAGCGGCACGTGTCGCTTTCGACCATGGTCCATGGCCTCGTATGCCCGGTGTGGAAAGAGCCAGAATTATGATGAAATGGGCAGACTTAATTTTGCAAAACATAGACGAACTAGCAGCATTGGAGGCCATCGATGCTGGGAAGTTTTACCACTTTTGTAATGTTGCTGACATTCCTGCAGCAGCAGCTACAATACGTTATTATGCTGGTGCAGCAGATAAAATCCACGGGGAGGTCTTGAAAGCTTCCGGGGAGTTTCATGCATATACTTTACTAGAATCAATTGGTGTTGTGGGACACATTATTCCCTGGAACTTCCCTACCACCATGTTTTTTGCCAAGGTTAGTCCTTCCTTGGCTGCCGGTTGCACAATGATCCTCAAGCCTGCTGAACAAACACCTCTCACAGCCTTGTATTATGCTCATCTAGCTAAATTGGCTGGAATTCCAGATGGAGTACTTAATGTAGTACCTGGATTTGGTCCAACTGCAGGAGCTGCAATAAGTTCACACATGGACATTGATATGGTAAGCTTCACAGGTTCAACAGAAGTGGGGCGTGAAATAATGCGTGCTGCAGCTAGTAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGCAAGTCACCCATCATAATTTTTGATGATGCTGATGTAAATAAAGCTGCCGAGCTTGCTCTCTTGGGCATCGTATTCAATAAGGGAGAAATCTGTGTTGCAGGTTCTCGCGTGCTCGTTCAAGAAGGAATTTATGATGAATTTGAGAAGAAATTGGTGGAGAAAGCAAAAGCCTGGGTGGTTGGTGATCCTTTTGATCCTAAAGCTCAACAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAGATCCTTTCCTATATTGAGATTGGAAAGAAAGAAGGGGCCACCCTTTTGACAGGCGGCAAAAGAGTGGGAAACAAGGGTTACTACATTGAACCTACAATTTTCTCCAATGTTAAGGAGGACATGCGTATAGTACAGGAGGAGATATTTGGTCCTGTGATGGCCTTGAGGAAGTTTAAGACTATTGAGGATGCAATTAAGATTGCCAACAGTACTAAGTATGGTCTAGCATCAGGCATTGTGACCAAGAGTTTGGACACAGCCAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAATTGCTACTTTGCCTTCGGGAATGACATTCCTTACGGAGGGTACAAAATGAGTGGATTTGGAAGAGATTTTGGACTGGATGCCCTACACAAGTATCTACAAGTTAAATCTGTTGTAACTCCCATTTACAACTCTCCTTGGCTTTGA 1506 0.4376 MAALSNGNQASSFKIPPIKFTKLFINGQFVDSLSGKEFETIDPRTGELITKIAEGGKEDIDVAVKAARVAFDHGPWPRMPGVERARIMMKWADLILQNIDELAALEAIDAGKFYHFCNVADIPAAAATIRYYAGAADKIHGEVLKASGEFHAYTLLESIGVVGHIIPWNFPTTMFFAKVSPSLAAGCTMILKPAEQTPLTALYYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDMVSFTGSTEVGREIMRAAASSNLKPVSLELGGKSPIIIFDDADVNKAAELALLGIVFNKGEICVAGSRVLVQEGIYDEFEKKLVEKAKAWVVGDPFDPKAQQGPQVDKKQFEKILSYIEIGKKEGATLLTGGKRVGNKGYYIEPTIFSNVKEDMRIVQEEIFGPVMALRKFKTIEDAIKIANSTKYGLASGIVTKSLDTANTVSRSIRAGIVWINCYFAFGNDIPYGGYKMSGFGRDFGLDALHKYLQVKSVVTPIYNSPWL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5748g00002 501 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 25 290 - -
Vium5748g00002 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
Vium5748g00002 501 FunFam Aldehyde dehydrogenase, putative 463 489 - -
Vium5748g00002 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Vium5748g00002 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 9 491 - -
Vium5748g00002 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Vium5748g00002 501 SUPERFAMILY ALDH-like 15 497 IPR016161 GO:0016491
Vium5748g00002 501 Pfam Aldehyde dehydrogenase family 30 491 IPR015590 GO:0016491
Vium5748g00002 501 FunFam Aldehyde dehydrogenase3 271 460 - -
Vium5748g00002 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5748g00002 Vium-Chr5748 8193 13076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5748g00002 4 501 Aldehyde Dehydrogenase Gene Family AT3G24503 69.261 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5748g00002 K12355 - gmx:100791396 907.901