Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5748g00001 ATGCCGAGTCGATCAATGGGAGTCATAACCCAAGACTGGGACCCCATCGTTCTGCACAAGGCCAAGCCCAAGGCGCAGGACCTCCGCAACCCCAAGGCCGTGAACCAGGCGCTCCGATCCGGCGCGGAGGTGCTTACTGTCAAGAAGTTCGACGCCGGTTCGAACCGGAAGGCCGGCGGTCCGGCTGTGAACCCGAGGAAGCTGGAGGAGGGGACGGAGCCAGCAGCGTTGGAGCGCGTGGCGGGGGAGGTCCGGCACGCGATCCAGAAGGCGCGTTTGGAGAAGAGGATGAGCCAGGCGGAGCTGGCGAAGCAGATCAACGAGCGAACGCAGGTGGTGCAGGAGTACGAAAACGGCAAGGCAGTGCCTAACCAGGCCGTGCTGGCCAAGATGGAGAGGGTTCTCGGTGTCAAACTCAGGGGAAAAATCGGAAAGTGA 438 0.6256 MPSRSMGVITQDWDPIVLHKAKPKAQDLRNPKAVNQALRSGAEVLTVKKFDAGSNRKAGGPAVNPRKLEEGTEPAALERVAGEVRHAIQKARLEKRMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKIGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5748g00001 145 SMART mbf_short4 87 142 IPR001387 -
Vium5748g00001 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Vium5748g00001 145 FunFam Multiprotein bridging factor 1 72 145 - -
Vium5748g00001 145 Coils Coil 88 110 - -
Vium5748g00001 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Vium5748g00001 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 10 142 - -
Vium5748g00001 145 CDD HTH_XRE 87 139 IPR001387 -
Vium5748g00001 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Vium5748g00001 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Vium5748g00001 145 Gene3D - 71 145 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5748g00001 Vium-Chr5748 1256 2005 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vium5748g00001 MBF1 7.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5748g00001 K03627 - twl:119996545 239.965