Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5747g00004 ATGAACAGACCTACCTTCATTTTCATAATAGGAATTTGTATAGGCTTTGTGGTTGGGATTGGTTTGACATTATCCATAGTACACTGCCTCGTAAGGAGAAGGAAGAAGCCCGCAGAGGTTGATAAGAGCATTTCTCACAGAGCAGTGACCATTCCTGTTAATGTCAAAGGGTATGGTTCTAACTCAACATCATCAGAGGGTGAGGAGTCACCTAGAACATCTGAGTGGAGTAACATGACTTTATGGTTGGAAAATCTTAGGAGAAGCAGTGCAATGTCGGCATGCGGAATTCCCAAGTATTCTTACAAAGATATACAAAGGGATACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCGCAGATGGCTACAGGTGGGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGATTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCAGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGATTTCGGAAAAGGTCGTGAGCCAATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCCAAGGTCACTGACTTTGGGCTTTCCAGACCTGAGATGATCATACCTCGCACATCAAATATCCGTGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATGTGGATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAGTGAAGTCTCCCAAAGCCGACCAACGATGTGTGAAATTGTTCAAGCATTATCTCAGCTTTGTAAGAGGAATGGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTACATCAACTGCGAGTACAGATATATTGGGAAGATTGCATAGCCGATGA 1278 0.421 MNRPTFIFIIGICIGFVVGIGLTLSIVHCLVRRRKKPAEVDKSISHRAVTIPVNVKGYGSNSTSSEGEESPRTSEWSNMTLWLENLRRSSAMSACGIPKYSYKDIQRDTSNFTTIIGNGAFGPVYKAQMATGGTVAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVDLVGYVADKGKHMLLYTYMSNGSLASHLYDFGKGREPMNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQFMKAKVTDFGLSRPEMIIPRTSNIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGGGKVGWEEIVDGQLNGKYDVDNLNDMASLAFICVSEVSQSRPTMCEIVQALSQLCKRNGKNLGRTSSAAALKDVCIEVDQIETKDFTSTASTDILGRLHSR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5747g00004 425 Gene3D Transferase(Phosphotransferase) domain 1 186 399 - -
Vium5747g00004 425 CDD STKc_IRAK 116 378 - -
Vium5747g00004 425 SMART serkin_6 110 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5747g00004 425 ProSiteProfiles Protein kinase domain profile. 110 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5747g00004 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vium5747g00004 425 PANTHER OS01G0750732 PROTEIN 15 391 - -
Vium5747g00004 425 Gene3D Phosphorylase Kinase; domain 1 76 185 - -
Vium5747g00004 425 FunFam calcium/calmodulin-regulated receptor-like kinase 1 186 396 - -
Vium5747g00004 425 SUPERFAMILY Protein kinase-like (PK-like) 88 375 IPR011009 -
Vium5747g00004 425 Pfam Protein tyrosine and serine/threonine kinase 112 374 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5747g00004 Vium-Chr5747 32343 38330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5747g00004 24 375 Glycoside Hydrolase AT3G07070 37.978 2.71e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vium5747g00004 PK_Tyr_Ser-Thr 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5747g00004 - - gmx:100816549 650.973