Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5747g00003 ATGAACAGACCTACCTTCATTTTCATAATAGGAATTTGTATAGGCTTTGTGGTTGGGATTGGTTTGACATTATCCATAGTACACTGCCTCGTAAGGAGAAGGAAGAAGCCCGCAGAGGTTGATAAGAGCATTTCTCACAGAGCAGTGACCATTCCTGTTAATGTCAAAGGGTATGGTTCTAACTCAACATCATCAGAGGGTGAGGAGTCACCTAGAACATCTGAGTGGAGTAACATGACTTTATGGTTGGAAAATCTTAGGAGAAGCAGTGCAATGTCGGCATGCGGAATTCCCAAGTATTCTTACAAAGATATACAAAGGGATACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCGCAGATGGCTACAGGTGGGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGATTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCAGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGATTTCGGAAAAGGTCGTGAGCCAATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCCAAGGTCACTGACTTTGGGCTTTCCAGACCTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATGTGGATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAGTGAAGTCTCCCAAAGCCGACCAACGATGTGTGAAATTGTTCAAGCATTATCTCAGCTTTGTAAGAGGAATGGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTACATCAACTGCGAGTACAGATATATTGGGAAGATTGCATAGCCGATGA 1194 0.4221 MNRPTFIFIIGICIGFVVGIGLTLSIVHCLVRRRKKPAEVDKSISHRAVTIPVNVKGYGSNSTSSEGEESPRTSEWSNMTLWLENLRRSSAMSACGIPKYSYKDIQRDTSNFTTIIGNGAFGPVYKAQMATGGTVAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVDLVGYVADKGKHMLLYTYMSNGSLASHLYDFGKGREPMNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQFMKAKVTDFGLSRPKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGGGKVGWEEIVDGQLNGKYDVDNLNDMASLAFICVSEVSQSRPTMCEIVQALSQLCKRNGKNLGRTSSAAALKDVCIEVDQIETKDFTSTASTDILGRLHSR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5747g00003 397 Gene3D Transferase(Phosphotransferase) domain 1 262 371 - -
Vium5747g00003 397 PANTHER OS01G0750732 PROTEIN 15 363 - -
Vium5747g00003 397 SUPERFAMILY Protein kinase-like (PK-like) 88 347 IPR011009 -
Vium5747g00003 397 ProSiteProfiles Protein kinase domain profile. 110 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5747g00003 397 SMART serkin_6 110 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5747g00003 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vium5747g00003 397 Gene3D Transferase(Phosphotransferase) domain 1 186 261 - -
Vium5747g00003 397 Pfam Protein tyrosine and serine/threonine kinase 261 346 IPR001245 GO:0004672|GO:0006468
Vium5747g00003 397 Pfam Protein tyrosine and serine/threonine kinase 112 260 IPR001245 GO:0004672|GO:0006468
Vium5747g00003 397 Gene3D Phosphorylase Kinase; domain 1 75 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5747g00003 Vium-Chr5747 32342 38330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5747g00003 24 347 Glycoside Hydrolase AT3G07070 35.519 5.26e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vium5747g00003 PK_Tyr_Ser-Thr 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5747g00003 - - gmx:100816549 583.563