Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5742g00011 ATGTATGCTTCAGCTTCCTTTACTTCACATTTGCTTCATGACCTTCTCATGGACTCAAGCTCAAGAAAGTTACTCCTTCAAAACCCAGTTCATCAATCAATCAACGTAGCTGACTTGCCCAAATCCTCAGATTCCATCACTTACAACTCAACAGACTCCTATTTCAAAGGTCGTGACTTCGATGCAAATGTTGTCATGATACTCGCTGTGCTCTTGTGTGCTGTCATTTGCTCACTCGGCTTGAACTCTATCATAAAGTGTGTCTTGAGATGCTCAAACATAGTCATCAACGACCCTTCAACTGTCACCAACTCTTCATCACGTTTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCCACCGTCAGCTACTCAACAGAGTTCAAACTCCCAGGTTTGGACACCGAGTGTGTGATATGCCTCTCAGAGTTTGTCACTGGTGATAAGCTACGCATTCTGCCAAAATGCAACCATGGTTTCCACGTTCGCTGCATTGACAGATGGCTTAGCTCTCACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAGAAAATTGTTGGATCCCAGCCACCAGTGCCACAGACCATTGTAAGGATCCAACCACTGGAACATGAAGCTTTGGAGCGTAACTATAGGGAACTATGCTAG 669 0.4514 MYASASFTSHLLHDLLMDSSSRKLLLQNPVHQSINVADLPKSSDSITYNSTDSYFKGRDFDANVVMILAVLLCAVICSLGLNSIIKCVLRCSNIVINDPSTVTNSSSRLANTGIKKKALKTFPTVSYSTEFKLPGLDTECVICLSEFVTGDKLRILPKCNHGFHVRCIDRWLSSHSSCPKCRQCLIETCKKIVGSQPPVPQTIVRIQPLEHEALERNYRELC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5742g00011 222 FunFam RING-H2 finger protein ATL73 100 187 - -
Vium5742g00011 222 Coils Coil 211 222 - -
Vium5742g00011 222 CDD RING-H2_EL5-like 139 182 - -
Vium5742g00011 222 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vium5742g00011 222 SUPERFAMILY RING/U-box 118 187 - -
Vium5742g00011 222 SMART ring_2 140 181 IPR001841 -
Vium5742g00011 222 Pfam Ring finger domain 139 182 IPR001841 -
Vium5742g00011 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Vium5742g00011 222 PANTHER RING-H2 FINGER PROTEIN ATL78 17 212 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5742g00011 Vium-Chr5742 83948 85041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5742g00011 23 186 C3H Transcription Factor Family AT3G10910 46.199 1.97e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5742g00011 K19040 - gmx:100527126 360.147