Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5742g00010 ATGTCTGCCATGAACTCCAGTGTCTTGGCCTGTAACTATGCCAGATCAGGATGCTCCGACCTCAATGCCAAGCTCACCTCCATGCCTTCTGTTGCATCTCCACAGGCTTCGGCTCTCAAGTTGCCTGTGATCAAGGCTCATCAAGCAAAGGTTACGGAATCTGAATCAAACCAAGGAAGAAGAAGTTCCCTTGTCTACTTAGCAGCTACCCTTTTCACTGCTGCAGCAGCTGCTTCCAACTCTTCAGCCAATGCAGGAATAATTGAAGAATACCTTGAAAAGAGCAAGACCAACAAGGAACTTAATGACAAGAAAAGGTTAGCCACCACTGGAGCCAACTTTGCAAGAGCATACACTGTGGAATTTGGCACTTGCAAGTTCCCTGAGAACTTCACCGGTTGCCAAGATCTAGCTAAGCAAAAGAAAGTGCCTTTTCTTTCTGATGATTTGGAGCTAGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA 513 0.4522 MSAMNSSVLACNYARSGCSDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQGRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5742g00010 170 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 42 170 IPR008796 GO:0009522|GO:0015979
Vium5742g00010 170 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 170 IPR008796 GO:0009522|GO:0015979
Vium5742g00010 170 FunFam Photosystem I reaction center subunit N 86 170 - -
Vium5742g00010 170 Gene3D - 86 170 IPR044907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5742g00010 1 141 Calmodulin-binding Proteins AT5G64040 62.500 2.26e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5742g00010 K02701 - cave:132166062 262.307