Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5742g00004 ATGAAAGGAAACAAGCCTTATCTAGTTGTCATCCTCATACAAGCCATCTACGCTGCTATGTTTCTGCTCTCAAAAGCAGCATTTGACCATGGCATGAACAATTTCATCTTTGTCTTCTACAGACAGACCGCAGCCACCATATTCCTCATCCCTTTCGCTTTCTTCTTTGAATGGAAAACTGCACCTCCTTTGTCTTTCGTGGCCTTCTGCAAGATCTTTTTACTTTCTTTTCTGGGGATCACTGCCAGCTTGGACATATATGGTATTGCCCTTGTTTATACTTCTGCTACTTTGGCTGCTGCTATCACAAACTGTCTCCCAGCCATCACCTTTTTCTTAGCGTTACTGCTCAGGATAGAAGTTTTGAAGGTAAAGAGTGCTCCTGGCGTTGCTAAGTTGGTTGGAGTAGTGGCATGCTTAACTGGAGCAGCAATCCTTGCTTTCTATAAAGGTCCTCATTTGGAGCTTTTAAGCCATTATAACCTTTTAGGGTACCATAAAAGCCACCAACACCTGGGTCATGTTGCATCTCGTTCATGGATAAAGGGTTGCTTCCTCATGCTCCTCTCCAGCACCTTTTGGGGAATGTGGCTTGTGCTACAGACTTTTGTCATAAAAGACTACCCTTCAAAGCTGCTCCTCACAACTCTTCAGTGTTTCTTAAGCTCCATTCAGTCTTTGGGCATTGCCTTGGCAGTAGAAAGAGACATTGAGCAATGGAAATTAGGGTGGAATGTCAGACTCCTTGCTGTTGCTTACTGTGGAATTATGGTGACTGGTGTAACATATTACTTACAAGCATGGGTTATAGAGAAGAAAGGACCAGTGTTTCTGGCCATGGCAACACCACTGTCTCTCGTAATGACCATCATCTCCTCCACGTTTATCTTGGGCGAAATAATAACTTTGGGAAGCATTTTAGGCAGCATCGCTTTGGTTATTGGACTTTACTGTGTGCTGTGGGGAAAGAGCAGAGAGCAAATGCCAAAAGCTTCCTCGGATTTGGAGGAGGCATCATCGACTTAG 1026 0.4415 MKGNKPYLVVILIQAIYAAMFLLSKAAFDHGMNNFIFVFYRQTAATIFLIPFAFFFEWKTAPPLSFVAFCKIFLLSFLGITASLDIYGIALVYTSATLAAAITNCLPAITFFLALLLRIEVLKVKSAPGVAKLVGVVACLTGAAILAFYKGPHLELLSHYNLLGYHKSHQHLGHVASRSWIKGCFLMLLSSTFWGMWLVLQTFVIKDYPSKLLLTTLQCFLSSIQSLGIALAVERDIEQWKLGWNVRLLAVAYCGIMVTGVTYYLQAWVIEKKGPVFLAMATPLSLVMTIISSTFILGEIITLGSILGSIALVIGLYCVLWGKSREQMPKASSDLEEASST 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5742g00004 341 PANTHER WAT1-RELATED PROTEIN 5 330 IPR030184 GO:0016020|GO:0022857
Vium5742g00004 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 150 - -
Vium5742g00004 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 325 - -
Vium5742g00004 341 Pfam EamA-like transporter family 5 146 IPR000620 GO:0016020
Vium5742g00004 341 Pfam EamA-like transporter family 182 320 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5742g00004 Vium-Chr5742 40053 43939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5742g00004 1 254 Nodulin-like Gene Family AT5G64700 62.791 7.62e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5742g00004 - - gmx:100775854 607.831