Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5742g00003 ATGGATTCTAACGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACATTTGGATGTTGATGGATGTCGCCATCGCAGTGGCGTCTGCTGACCACAGTGATGAATTGAGGCGTCGAAGAGACGGAATCGTTGAGCGCCTCTACGCGACGAGTTTCTTGTCATCGTCGCGGTGTCCAAATTGTAACATCGACGACGTTAGAGAAACCGAGATGCAAAGCAATCCCTCCGCGGAGGAGGAAAAGGATACTTGCGAAGTTTTATTTGACGATGAACAAAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCCAAAGATTCGTTGTTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTCCGAGCCTTACAAGAGACTGATATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGACGTTAAGAAATTGGTGAAGTTGCTAGTCAGGAAATGGAAGGAGATTATAGATGAGTGGGTGAAGTTGAAGACGCCAGGAGAAGCGAGTACTACTGTCATGGCTGACGAGGACTCGCCACAAGATAAAATCCAACAAAATGAACATCGTCAGATTCCTGATTTTGCAGACTCGCCAAATCTACACAATGAAAGTTTTGGGTCAGAGCACAACAACATTGAAACACAACAACGAAAACCAAAAGCAATTCCTCACAAAGAATCTCCCCTAAAACCATCGGCATCAAGACAAAGGGAGAGCAATTTTGAGTTGGATAAACTTGCTTCAGCGAGAAAGCGACTCCAAGAGAACTACAAAGAGCCAAAAAGCAAAGAACGATCCAGGTGA 828 0.4469 MDSNDFRSILESAGIDIWMLMDVAIAVASADHSDELRRRRDGIVERLYATSFLSSSRCPNCNIDDVRETEMQSNPSAEEEKDTCEVLFDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTPGEASTTVMADEDSPQDKIQQNEHRQIPDFADSPNLHNESFGSEHNNIETQQRKPKAIPHKESPLKPSASRQRESNFELDKLASARKRLQENYKEPKSKERSR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5742g00003 275 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 275 IPR044790 -
Vium5742g00003 275 SMART TFS2_5 95 166 IPR003617 GO:0005634
Vium5742g00003 275 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 174 IPR035441 -
Vium5742g00003 275 CDD TFIIS_I 92 165 - -
Vium5742g00003 275 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Vium5742g00003 275 MobiDBLite consensus disorder prediction 200 275 - -
Vium5742g00003 275 MobiDBLite consensus disorder prediction 245 275 - -
Vium5742g00003 275 Pfam TFIIS helical bundle-like domain 115 164 IPR017923 -
Vium5742g00003 275 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 178 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5742g00003 Vium-Chr5742 9233 11430 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium5742g00003 Med26 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5742g00003 - - gmx:100796457 387.882