Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5737g00004 ATGTCACCATCAGTTGCACCATCAAGTCCATTTCCAGTAGATCCACCATTAGTCCACCCAGTCATACCAGCAGCTTCTCCATCCAAATCACCAGCACCTATTGTCTCTCCTGCATTGACTCCTTCCAGAAGCTTTAGTTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCAGTGTACAAAACACCAAAGCCACTACCGGCTATAGTACATTCCCCTACTCAAGCAAGGCAATTTCACTATGCTCCTGAACCATCTCCTAACAAAGATTACCCTCCTGCATCTTCACCTTCAACCACATTCTATAAGCATCACCACACAAGGAACACAATCAGAAGCCCTGCTCCTGCATCATCATATTCAGTTTCTCCTTCCACTTTAAAACACCAAGATGAACCAATTCCTCCCTCACGGTTGCCAGCAAGTAGGCAAAGACAACATGCTCCATCACCATTGAACACAGAAGGTTCAACAGTTTCCCCGTTTCAGTCACCAGTAAGCCAGATTTCACCAGCTCCTTCTCCATCCTTCAAAATACTCCCTCATTCAACCAAAATTCCAATTCATCCTCCCGAGGTATCTCCTTTTCGGCCTTCTTCCAAGAGCCCTAAGAAGCCGATCCTACCTCGTAATCAAGCACTACCACCGCCACCTCCCAATGAAGATTGTATATCACTGGTTTGCTCAGATCCTTATACAAGTACTCCACCTGGTGCACCTTGCAAATGTGTGTGGCCCATGAAAGTCGGTCTTCGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTTTCGGAGTTTGCTTCTGAAATTGCCATTGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCAGCAAACATGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCTGGCGGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAAGAGGCAGCATAAAGGTGGAATTAGAAAGGGCATGATTGCTGTTATTTCTCTCTCAGTTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGTCCTTGTTCAAGTTCAGAGATCATTCAAGTAAACTGGCATCAACCCCACATGTTCTGTCTCCTCCACTTACCAAAGCTCCAGGTGCTGCTGGATCAGCAGTTGGAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATGCAGGATCTGCTAAGACTTTCAGCATGAATGACATTGAGAAAGCCACAGATAATTTCCATGACTCCAGAGTACTTGGAGAAGGTGGCTTTGGGCGTGTTTATAGTGGTGTACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTATCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAACTTAGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGGATGGACAAGGAAAATAGCCCCCTTGATTGGAGTGCTCGGATAAAGATAGCACTTGGCTCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGGGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTAGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTAATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACCGGCCACCTTCTTGTGAAGAGTGATGTTTACAGCTACGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTAGACATGTCACGACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCATTGCTCTCAAGCGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTGGGACCTGATGTGCCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTTCAGACCGTCCTTTTATGGGTGAGGTTGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGACGAGGCAAGAGAAACAGGCTCAAGTTCTACCTCTGTTGATTTCAGTCATTCTAGACAAGTATCAGATAATTTTCAAGGCCAATCCTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATGGGCTGTTGGCATCAGAGTTATTCAGCTCATCATCCGCAAGATATGGAAAGCGAGTGTCAGGATCATTTAGAAGGCATTCTTATTCAGGTCCTCTTAGTACTGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGTGGTAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 2610 0.4425 MSPSVAPSSPFPVDPPLVHPVIPAASPSKSPAPIVSPALTPSRSFSWKKGGEPVSAPVYKTPKPLPAIVHSPTQARQFHYAPEPSPNKDYPPASSPSTTFYKHHHTRNTIRSPAPASSYSVSPSTLKHQDEPIPPSRLPASRQRQHAPSPLNTEGSTVSPFQSPVSQISPAPSPSFKILPHSTKIPIHPPEVSPFRPSSKSPKKPILPRNQALPPPPPNEDCISLVCSDPYTSTPPGAPCKCVWPMKVGLRLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANMQPDKTIVFIDLVPLGENFDNTTAFLTSERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGGGNNSRTIKPLGVDISKRQHKGGIRKGMIAVISLSVFLVVVLCFAAAWSLFKFRDHSSKLASTPHVLSPPLTKAPGAAGSAVGGRLASASTSFRSSIAAYAGSAKTFSMNDIEKATDNFHDSRVLGEGGFGRVYSGVLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKENSPLDWSARIKIALGSARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVPSDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSHSRQVSDNFQGQSSATNYDSGVDIENGLLASELFSSSSARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5737g00004 869 Pfam Protein tyrosine and serine/threonine kinase 489 759 IPR001245 GO:0004672|GO:0006468
Vium5737g00004 869 MobiDBLite consensus disorder prediction 110 129 - -
Vium5737g00004 869 CDD STKc_IRAK 492 760 - -
Vium5737g00004 869 Gene3D Phosphorylase Kinase; domain 1 458 561 - -
Vium5737g00004 869 SUPERFAMILY Protein kinase-like (PK-like) 467 759 IPR011009 -
Vium5737g00004 869 PANTHER OS01G0750732 PROTEIN 214 785 - -
Vium5737g00004 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vium5737g00004 869 MobiDBLite consensus disorder prediction 1 217 - -
Vium5737g00004 869 FunFam receptor-like serine/threonine-protein kinase ALE2 459 561 - -
Vium5737g00004 869 Gene3D Transferase(Phosphotransferase) domain 1 562 789 - -
Vium5737g00004 869 ProSitePatterns Protein kinases ATP-binding region signature. 492 514 IPR017441 GO:0005524
Vium5737g00004 869 MobiDBLite consensus disorder prediction 142 173 - -
Vium5737g00004 869 MobiDBLite consensus disorder prediction 1 22 - -
Vium5737g00004 869 FunFam Receptor-like serine/threonine-protein kinase ALE2 562 779 - -
Vium5737g00004 869 ProSiteProfiles Protein kinase domain profile. 486 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5737g00004 Vium-Chr5737 7 6516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5737g00004 14 865 Receptor kinase-like Gene Family AT5G56890 56.556 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium5737g00004 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5737g00004 - - vum:124841563 1620.52