Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5737g00003 ATGTCACCATCAGTTGCACCATCAAGTCCATTTCCAGTAGATCCACCATTAGTCCACCCAGTCATACCAGCAGCTTCTCCATCCAAATCACCAGCACCTATTGTCTCTCCTGCATTGACTCCTTCCAGAAGCTTTAGTTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCAGTGTACAAAACACCAAAGCCACTACCGGCTATAGTACATTCCCCTACTCAAGCACCGGTTGTCTCTCCAGCATTAACACCTTCTAGAAGCTTCAATTGGAAAAGAGGTGGAGAACCAGTTTCTGCTCCTCCATACAAAACACCAAAGCCGCTACCCGCTATAGTACATTCTCCTACTCAAGCAAGGCAATTTCACTATGCTCCTGAACCATCTCCTAACAAAGATTACCCTCCTGCATCTTCACCTTCAACCACATTCTATAAGCATCACCACACAAGGAACACAATCAGAAGCCCTGCTCCTGCATCATCATATTCAGTTTCTCCTTCCACTTTAAAACACCAAGATGAACCAATTCCTCCCTCACGGTTGCCAGCAAGTAGGCAAAGACAACATGCTCCATCACCATTGAACACAGGTTCAACAGTTTCCCCGTTTCAGTCACCAGTAAGCCAGATTTCACCAGCTCCTTCTCCATCCTTCAAAATACTCCCTCATTCAACCAAAATTCCAATTCATCCTCCCGAGGTATCTCCTTTTCGGCCTTCTTCCAAGAGCCCTAAGAAGCCGATCCTACCTCGTAATCAAGCACTACCACCGCCACCTCCCAATGAAGATTGTATATCACTGGTTTGCTCAGATCCTTATACAAGTACTCCACCTGGTGCACCTTGCAAATGTGTGTGGCCCATGAAAGTCGGTCTTCGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTTTCGGAGTTTGCTTCTGAAATTGCCATTGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCAGCAAACATGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCTGGCGGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAAGAGGCAGCATAAAGGTGGAATTAGAAAGGGCATGATTGCTGTTATTTCTCTCTCAGTTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGTCCTTGTTCAAGTTCAGAGATCATTCAAGTAAACTGGCATCAACCCCACATGTTCTGTCTCCTCCACTTACCAAAGCTCCAGGTGCTGCTGGATCAGCAGTTGGAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATGCAGGATCTGCTAAGACTTTCAGCATGAATGACATTGAGAAAGCCACAGATAATTTCCATGACTCCAGAGTACTTGGAGAAGGTGGCTTTGGGCGTGTTTATAGTGGTGTACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTATCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAACTTAGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGGATGGACAAGGAAAATAGCCCCCTTGATTGGAGTGCTCGGATAAAGATAGCACTTGGCTCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGGGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTAGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTAATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACCGGCCACCTTCTTGTGAAGAGTGATGTTTACAGCTACGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTAGACATGTCACGACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCATTGCTCTCAAGCGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTGGGACCTGATGTGCCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTTCAGACCGTCCTTTTATGGGTGAGGTTGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGACGAGGCAAGAGAAACAGGCTCAAGTTCTACCTCTGTTGATTTCAGTCATTCTAGACAAGTATCAGATAATTTTCAAGGCCAATCCTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATGGGCTGTTGGCATCAGAGTTATTCAGCTCATCATCCGCAAGATATGGAAAGCGAGTGTCAGGATCATTTAGAAGGCATTCTTATTCAGGTCCTCTTAGTACTGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGTGGTAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 2736 0.4437 MSPSVAPSSPFPVDPPLVHPVIPAASPSKSPAPIVSPALTPSRSFSWKKGGEPVSAPVYKTPKPLPAIVHSPTQAPVVSPALTPSRSFNWKRGGEPVSAPPYKTPKPLPAIVHSPTQARQFHYAPEPSPNKDYPPASSPSTTFYKHHHTRNTIRSPAPASSYSVSPSTLKHQDEPIPPSRLPASRQRQHAPSPLNTGSTVSPFQSPVSQISPAPSPSFKILPHSTKIPIHPPEVSPFRPSSKSPKKPILPRNQALPPPPPNEDCISLVCSDPYTSTPPGAPCKCVWPMKVGLRLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANMQPDKTIVFIDLVPLGENFDNTTAFLTSERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGGGNNSRTIKPLGVDISKRQHKGGIRKGMIAVISLSVFLVVVLCFAAAWSLFKFRDHSSKLASTPHVLSPPLTKAPGAAGSAVGGRLASASTSFRSSIAAYAGSAKTFSMNDIEKATDNFHDSRVLGEGGFGRVYSGVLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKENSPLDWSARIKIALGSARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVPSDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSHSRQVSDNFQGQSSATNYDSGVDIENGLLASELFSSSSARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5737g00003 911 CDD STKc_IRAK 534 802 - -
Vium5737g00003 911 Gene3D Phosphorylase Kinase; domain 1 500 603 - -
Vium5737g00003 911 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Vium5737g00003 911 FunFam receptor-like serine/threonine-protein kinase ALE2 501 603 - -
Vium5737g00003 911 PANTHER OS01G0750732 PROTEIN 256 827 - -
Vium5737g00003 911 Pfam Protein tyrosine and serine/threonine kinase 531 801 IPR001245 GO:0004672|GO:0006468
Vium5737g00003 911 MobiDBLite consensus disorder prediction 153 172 - -
Vium5737g00003 911 SUPERFAMILY Protein kinase-like (PK-like) 509 801 IPR011009 -
Vium5737g00003 911 FunFam Receptor-like serine/threonine-protein kinase ALE2 604 821 - -
Vium5737g00003 911 MobiDBLite consensus disorder prediction 77 259 - -
Vium5737g00003 911 MobiDBLite consensus disorder prediction 1 52 - -
Vium5737g00003 911 MobiDBLite consensus disorder prediction 1 22 - -
Vium5737g00003 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Vium5737g00003 911 ProSiteProfiles Protein kinase domain profile. 528 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5737g00003 911 MobiDBLite consensus disorder prediction 185 215 - -
Vium5737g00003 911 Gene3D Transferase(Phosphotransferase) domain 1 604 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5737g00003 Vium-Chr5737 7 6516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5737g00003 16 907 Receptor kinase-like Gene Family AT5G56890 55.473 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium5737g00003 PK_Tyr_Ser-Thr 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5737g00003 - - vum:124841563 1729.92