Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5737g00002 ATGTCACCATCAGTTGCACCATCAAGTCCATTTCCAGTAGATCCACCATTAGTCCACCCAGTCATACCAGCAGCTTCTCCATCCAAATCACCAGCACCTATTGTCTCTCCTGCATTGACTCCTTCCAGAAGCTTTAGTTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCAGTGTACAAAACACCAAAGCCACTACCGGCTATAGTACATTCCCCTACTCAAGCACCGGTTGTCTCTCCAGCATTAACACCTTCTAGAAGCTTCAATTGGAAAAGAGGTGGAGAACCAGTTTCTGCTCCTCCATACAAAACACCAAAGCCGCTACCCGCTATAGTACATTCTCCTACTCAAGCAAGGCAATTTCACTATGCTCCTGAACCATCTCCTAACAAAGATTACCCTCCTGCATCTTCACCTTCAACCACATTCTATAAGCATCACCACACAAGGAACACAATCAGAAGCCCTGCTCCTGCATCATCATATTCAGTTTCTCCTTCCACTTTAAAACACCAAGATGAACCAATTCCTCCCTCACGGTTGCCAGCAAGTAGGCAAAGACAACATGCTCCATCACCATTGAACACAGAAGGTTCAACAGTTTCCCCGTTTCAGTCACCAGTAAGCCAGATTTCACCAGCTCCTTCTCCATCCTTCAAAATACTCCCTCATTCAACCAAAATTCCAATTCATCCTCCCGAGGTATCTCCTTTTCGGCCTTCTTCCAAGAGCCCTAAGAAGCCGATCCTACCTCGTAATCAAGCACTACCACCGCCACCTCCCAATGAAGATTGTATATCACTGGTTTGCTCAGATCCTTATACAAGTACTCCACCTGGTGCACCTTGCAAATGTGTGTGGCCCATGAAAGTCGGTCTTCGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTTTCGGAGTTTGCTTCTGAAATTGCCATTGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCAGCAAACATGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCTGGCGGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAAGAGGCAGCATAAAGGTGGAATTAGAAAGGGCATGATTGCTGTTATTTCTCTCTCAGTTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGTCCTTGTTCAAGTTCAGAGATCATTCAAGTAAACTGGCATCAACCCCACATGTTCTGTCTCCTCCACTTACCAAAGCTCCAGTTGGAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATGCAGGATCTGCTAAGACTTTCAGCATGAATGACATTGAGAAAGCCACAGATAATTTCCATGACTCCAGAGTACTTGGAGAAGGTGGCTTTGGGCGTGTTTATAGTGGTGTACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTATCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAACTTAGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGGATGGACAAGGAAAATAGCCCCCTTGATTGGAGTGCTCGGATAAAGATAGCACTTGGCTCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGGGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTAGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTAATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACCGGCCACCTTCTTGTGAAGAGTGATGTTTACAGCTACGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTAGACATGTCACGACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCATTGCTCTCAAGCGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTGGGACCTGATGTGCCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTTCAGACCGTCCTTTTATGGGTGAGGTTGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGACGAGGCAAGAGAAACAGGCTCAAGTTCTACCTCTGTTGATTTCAGTCATTCTAGACAAGTATCAGATAATTTTCAAGGCCAATCCTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATGGGCTGTTGGCATCAGAGTTATTCAGCTCATCATCCGCAAGATATGGAAAGCGAGTGTCAGGATCATTTAGAAGGCATTCTTATTCAGGTCCTCTTAGTACTGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGTGGTAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 2721 0.4425 MSPSVAPSSPFPVDPPLVHPVIPAASPSKSPAPIVSPALTPSRSFSWKKGGEPVSAPVYKTPKPLPAIVHSPTQAPVVSPALTPSRSFNWKRGGEPVSAPPYKTPKPLPAIVHSPTQARQFHYAPEPSPNKDYPPASSPSTTFYKHHHTRNTIRSPAPASSYSVSPSTLKHQDEPIPPSRLPASRQRQHAPSPLNTEGSTVSPFQSPVSQISPAPSPSFKILPHSTKIPIHPPEVSPFRPSSKSPKKPILPRNQALPPPPPNEDCISLVCSDPYTSTPPGAPCKCVWPMKVGLRLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANMQPDKTIVFIDLVPLGENFDNTTAFLTSERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGGGNNSRTIKPLGVDISKRQHKGGIRKGMIAVISLSVFLVVVLCFAAAWSLFKFRDHSSKLASTPHVLSPPLTKAPVGGRLASASTSFRSSIAAYAGSAKTFSMNDIEKATDNFHDSRVLGEGGFGRVYSGVLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKENSPLDWSARIKIALGSARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVPSDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSHSRQVSDNFQGQSSATNYDSGVDIENGLLASELFSSSSARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5737g00002 906 ProSiteProfiles Protein kinase domain profile. 523 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5737g00002 906 MobiDBLite consensus disorder prediction 77 260 - -
Vium5737g00002 906 FunFam receptor-like serine/threonine-protein kinase ALE2 496 598 - -
Vium5737g00002 906 Pfam Protein tyrosine and serine/threonine kinase 526 796 IPR001245 GO:0004672|GO:0006468
Vium5737g00002 906 MobiDBLite consensus disorder prediction 185 216 - -
Vium5737g00002 906 Gene3D Transferase(Phosphotransferase) domain 1 599 826 - -
Vium5737g00002 906 FunFam Receptor-like serine/threonine-protein kinase ALE2 599 816 - -
Vium5737g00002 906 MobiDBLite consensus disorder prediction 153 172 - -
Vium5737g00002 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Vium5737g00002 906 SUPERFAMILY Protein kinase-like (PK-like) 504 796 IPR011009 -
Vium5737g00002 906 CDD STKc_IRAK 529 797 - -
Vium5737g00002 906 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Vium5737g00002 906 Gene3D Phosphorylase Kinase; domain 1 495 598 - -
Vium5737g00002 906 MobiDBLite consensus disorder prediction 1 52 - -
Vium5737g00002 906 PANTHER OS01G0750732 PROTEIN 257 822 - -
Vium5737g00002 906 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5737g00002 Vium-Chr5737 7 6516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5737g00002 16 902 Receptor kinase-like Gene Family AT5G56890 54.883 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium5737g00002 PK_Tyr_Ser-Thr 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5737g00002 - - vum:124841563 1719.13