Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5737g00001 ATGTCACCATCAGTTGCACCATCAAGTCCATTTCCAGTAGATCCACCATTAGTCCACCCAGTCATACCAGCAGCTTCTCCATCCAAATCACCAGCACCTATTGTCTCTCCTGCATTGACTCCTTCCAGAAGCTTTAGTTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCAGTGTACAAAACACCAAAGCCACTACCGGCTATAGTACATTCCCCTACTCAAGCACCGGTTGTCTCTCCAGCATTAACACCTTCTAGAAGCTTCAATTGGAAAAGAGGTGGAGAACCAGTTTCTGCTCCTCCATACAAAACACCAAAGCCGCTACCCGCTATAGTACATTCTCCTACTCAAGCAAGGCAATTTCACTATGCTCCTGAACCATCTCCTAACAAAGATTACCCTCCTGCATCTTCACCTTCAACCACATTCTATAAGCATCACCACACAAGGAACACAATCAGAAGCCCTGCTCCTGCATCATCATATTCAGTTTCTCCTTCCACTTTAAAACACCAAGATGAACCAATTCCTCCCTCACGGTTGCCAGCAAGTAGGCAAAGACAACATGCTCCATCACCATTGAACACAGAAGGTTCAACAGTTTCCCCGTTTCAGTCACCAGTAAGCCAGATTTCACCAGCTCCTTCTCCATCCTTCAAAATACTCCCTCATTCAACCAAAATTCCAATTCATCCTCCCGAGGTATCTCCTTTTCGGCCTTCTTCCAAGAGCCCTAAGAAGCCGATCCTACCTCGTAATCAAGCACTACCACCGCCACCTCCCAATGAAGATTGTATATCACTGGTTTGCTCAGATCCTTATACAAGTACTCCACCTGGTGCACCTTGCAAATGTGTGTGGCCCATGAAAGTCGGTCTTCGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTTTCGGAGTTTGCTTCTGAAATTGCCATTGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCAGCAAACATGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCTGGCGGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAAGAGGCAGCATAAAGGTGGAATTAGAAAGGGCATGATTGCTGTTATTTCTCTCTCAGTTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGTCCTTGTTCAAGTTCAGAGATCATTCAAGTAAACTGGCATCAACCCCACATGTTCTGTCTCCTCCACTTACCAAAGCTCCAGGTGCTGCTGGATCAGCAGTTGGAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATGCAGGATCTGCTAAGACTTTCAGCATGAATGACATTGAGAAAGCCACAGATAATTTCCATGACTCCAGAGTACTTGGAGAAGGTGGCTTTGGGCGTGTTTATAGTGGTGTACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTATCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAACTTAGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGGATGGACAAGGAAAATAGCCCCCTTGATTGGAGTGCTCGGATAAAGATAGCACTTGGCTCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGGGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTAGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTAATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACCGGCCACCTTCTTGTGAAGAGTGATGTTTACAGCTACGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTAGACATGTCACGACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCATTGCTCTCAAGCGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTGGGACCTGATGTGCCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTTCAGACCGTCCTTTTATGGGTGAGGTTGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGACGAGGCAAGAGAAACAGGCTCAAGTTCTACCTCTGTTGATTTCAGTCATTCTAGACAAGTATCAGATAATTTTCAAGGCCAATCCTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATGGGCTGTTGGCATCAGAGTTATTCAGCTCATCATCCGCAAGATATGGAAAGCGAGTGTCAGGATCATTTAGAAGGCATTCTTATTCAGGTCCTCTTAGTACTGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGTGGTAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 2739 0.4436 MSPSVAPSSPFPVDPPLVHPVIPAASPSKSPAPIVSPALTPSRSFSWKKGGEPVSAPVYKTPKPLPAIVHSPTQAPVVSPALTPSRSFNWKRGGEPVSAPPYKTPKPLPAIVHSPTQARQFHYAPEPSPNKDYPPASSPSTTFYKHHHTRNTIRSPAPASSYSVSPSTLKHQDEPIPPSRLPASRQRQHAPSPLNTEGSTVSPFQSPVSQISPAPSPSFKILPHSTKIPIHPPEVSPFRPSSKSPKKPILPRNQALPPPPPNEDCISLVCSDPYTSTPPGAPCKCVWPMKVGLRLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANMQPDKTIVFIDLVPLGENFDNTTAFLTSERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGGGNNSRTIKPLGVDISKRQHKGGIRKGMIAVISLSVFLVVVLCFAAAWSLFKFRDHSSKLASTPHVLSPPLTKAPGAAGSAVGGRLASASTSFRSSIAAYAGSAKTFSMNDIEKATDNFHDSRVLGEGGFGRVYSGVLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKENSPLDWSARIKIALGSARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVPSDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSHSRQVSDNFQGQSSATNYDSGVDIENGLLASELFSSSSARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5737g00001 912 MobiDBLite consensus disorder prediction 77 260 - -
Vium5737g00001 912 SUPERFAMILY Protein kinase-like (PK-like) 510 802 IPR011009 -
Vium5737g00001 912 MobiDBLite consensus disorder prediction 185 216 - -
Vium5737g00001 912 FunFam Receptor-like serine/threonine-protein kinase ALE2 605 822 - -
Vium5737g00001 912 Gene3D Transferase(Phosphotransferase) domain 1 605 832 - -
Vium5737g00001 912 ProSiteProfiles Protein kinase domain profile. 529 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5737g00001 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Vium5737g00001 912 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Vium5737g00001 912 FunFam receptor-like serine/threonine-protein kinase ALE2 502 604 - -
Vium5737g00001 912 MobiDBLite consensus disorder prediction 153 172 - -
Vium5737g00001 912 Pfam Protein tyrosine and serine/threonine kinase 532 802 IPR001245 GO:0004672|GO:0006468
Vium5737g00001 912 MobiDBLite consensus disorder prediction 1 52 - -
Vium5737g00001 912 MobiDBLite consensus disorder prediction 1 22 - -
Vium5737g00001 912 PANTHER OS01G0750732 PROTEIN 257 828 - -
Vium5737g00001 912 CDD STKc_IRAK 535 803 - -
Vium5737g00001 912 Gene3D Phosphorylase Kinase; domain 1 501 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5737g00001 Vium-Chr5737 7 6516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5737g00001 16 908 Receptor kinase-like Gene Family AT5G56890 55.414 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium5737g00001 PK_Tyr_Ser-Thr 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5737g00001 - - vum:124841563 1736.47