Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5733g00013 ATGGTAGCTATGATGGGTTGCCTGGCTAGAGAAAAAGGGTGGAAGAAAGGCCCTTGGACTGGTGAAGAAGACAAGTTGCTAAGTGAATATGTTAGCTTGTATGGGGAAGGAAGGTGGAGTTCAGTGGCAAAGTTTACAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAGCCTGGTCTGAAGAAAGGTCAATTAACACCTTTCGAGGAAGGAACCATTATGGAACTACATGCAATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTCGGGAAGAGGGAGAAATCCAAACACAAGAAGCTACAAAGGCGACAGAAGGAACAACAACAACAACAACCTGAGAAGTGTGATTTCAAAAGCATCATGTGCCACAAGGATACCATGAACGGAACAAAATCGTTTGAGACACAAAATAGTAAGATACAAGAAATTGGATTGATGAACCCAACAATAGATAACCAATACAATAATACCGTTCCTTCCATGCACGAGGGTTTCTCATCCACGTGGCCGGAGGATGATGGCTTATGGTTTGGTTTATGGGACTTTGATGAACCACTGATGAGTTTTGCAGATTATGTTAACCAGTTTAGCAAATGTGTCATGCCAGATGAAGGCATATTTTCTGCTGGAGAGGATTCCACGCAAAGTCATGTTTGTTTTGATGATATATTTGGATGA 753 0.4143 MVAMMGCLAREKGWKKGPWTGEEDKLLSEYVSLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPFEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKLQRRQKEQQQQQPEKCDFKSIMCHKDTMNGTKSFETQNSKIQEIGLMNPTIDNQYNNTVPSMHEGFSSTWPEDDGLWFGLWDFDEPLMSFADYVNQFSKCVMPDEGIFSAGEDSTQSHVCFDDIFG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5733g00013 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Vium5733g00013 250 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Vium5733g00013 250 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vium5733g00013 250 Gene3D - 15 68 - -
Vium5733g00013 250 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 185 - -
Vium5733g00013 250 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vium5733g00013 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Vium5733g00013 250 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vium5733g00013 250 Gene3D - 72 143 - -
Vium5733g00013 250 SMART sant 68 116 IPR001005 -
Vium5733g00013 250 SMART sant 15 65 IPR001005 -
Vium5733g00013 250 MobiDBLite consensus disorder prediction 117 139 - -
Vium5733g00013 250 CDD SANT 82 114 IPR001005 -
Vium5733g00013 250 CDD SANT 18 63 IPR001005 -
Vium5733g00013 250 FunFam Myb transcription factor 16 68 - -
Vium5733g00013 250 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5733g00013 Vium-Chr5733 65400 66432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5733g00013 13 209 MYB Transcription Factor Family AT3G30210 51.442 1.05e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5733g00013 Myb_DNA-binding 1.7e-16 CL0123