Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5733g00012 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACCTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCACTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGAGCGGTGGAAGTTAGCAAACCTGCTAAAGAGCTCGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGAACCCAAAGAAACCTTCTAGGGGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAGCAAGTGAGGTCCACCAAGACACAATTCATGCTGGATCAGTTGGCTGATCTTCAAAACAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGTCCACAGAATTCTCAGTCTCAGGGCTTCTTCCAGCCACTGGAATGCAATCCCACCTTGCAGATTGGTCCTGATTACAGGTACAATGTTGTCGCTTAA 681 0.4508 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMQYGGPQNSQSQGFFQPLECNPTLQIGPDYRYNVVA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5733g00012 226 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vium5733g00012 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium5733g00012 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium5733g00012 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium5733g00012 226 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5733g00012 226 Coils Coil 124 144 - -
Vium5733g00012 226 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vium5733g00012 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium5733g00012 226 FunFam MADS-box transcription factor 1 13 87 - -
Vium5733g00012 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium5733g00012 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium5733g00012 226 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5733g00012 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Vium5733g00012 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium5733g00012 226 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5733g00012 Vium-Chr5733 53598 59578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5733g00012 1 217 MADS-box Gene Family AT5G15800 78.829 1.57e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium5733g00012 K-box 5.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5733g00012 K09264 - gmx:100788427 417.542