Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5733g00011 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACCTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCACTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGAGCGGTGGAAGTTAGCAAACCTGCTAAAGAGCTCGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGAACCCAAAGAAACCTTCTAGGGGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAGCAAGTGAGGTCCACCAAGACACAATTCATGCTGGATCAGTTGGCTGATCTTCAAAACAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGTCCACAGAATTCTCAGTCTCAGGGCTTCTTCCAGCCACTGGAATGCAATCCCACCTTGCAGATTGGTCCTGATTACAGGTACAATGTTGTCGCTTAA 684 0.4518 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMQYGGPQNSQSQGFFQPLECNPTLQIGPDYRYNVVA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5733g00011 227 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vium5733g00011 227 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5733g00011 227 Coils Coil 125 145 - -
Vium5733g00011 227 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5733g00011 227 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vium5733g00011 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium5733g00011 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Vium5733g00011 227 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vium5733g00011 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium5733g00011 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium5733g00011 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium5733g00011 227 FunFam MADS-box transcription factor 1 13 88 - -
Vium5733g00011 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium5733g00011 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium5733g00011 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5733g00011 Vium-Chr5733 53598 59579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5733g00011 1 218 MADS-box Gene Family AT5G15800 78.475 1.16e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium5733g00011 K-box 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5733g00011 K09264 - gmx:100786066 424.091