Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5733g00003 | ATGGGATCAGTTTGTTGCTGTTTTAATGTTGATGATTTTGAAGATTATGTGAATCCAAATAGTCCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCCTACAGAACGTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAAGCGCATGCGATTCCTTCATCTTTACAGGGCACAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATTCAGACCCCAGGTTTTTCCGTTCACAGCGAGATGGATTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATACTGACTCAGAATCTTTAAGTTTGGGTGGTAAATGGAACGATACCAGTGAAGATGGATCAAAGGAATATCGGAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACGACTGGAGCTGGGGTTGTCTATTCATCGTCGGAAGTGGAGGATGTCTGTCCAACTTGCCTTGAAGAATACACTGAAGAGAATCCAAAGATATTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAATTGTCCTGTTTGTGGGAAGGAGATGGTATTCGATGAAACGACTTAA | 678 | 0.4174 | MGSVCCCFNVDDFEDYVNPNSPVYRNCMCLSCFLQNVLTVYASIFRRGEAHAIPSSLQGTASMTSTASLDNSLSDMYRSPPRPLPYDSDPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDTDSESLSLGGKWNDTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEVEDVCPTCLEEYTEENPKILTKCSHHFHLGCIYEWMERSDNCPVCGKEMVFDETT | 225 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5733g00003 | 225 | MobiDBLite | consensus disorder prediction | 91 | 123 | - | - | |
Vium5733g00003 | 225 | SUPERFAMILY | RING/U-box | 171 | 222 | - | - | |
Vium5733g00003 | 225 | CDD | RING-H2_AIRP1-like | 172 | 219 | - | - | |
Vium5733g00003 | 225 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 223 | IPR013083 | - | |
Vium5733g00003 | 225 | MobiDBLite | consensus disorder prediction | 72 | 148 | - | - | |
Vium5733g00003 | 225 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 57 | 223 | - | - | |
Vium5733g00003 | 225 | SMART | ring_2 | 175 | 215 | IPR001841 | - | |
Vium5733g00003 | 225 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 152 | 222 | - | - | |
Vium5733g00003 | 225 | Pfam | RING-H2 zinc finger domain | 169 | 215 | IPR024766 | GO:0008270 | |
Vium5733g00003 | 225 | ProSiteProfiles | Zinc finger RING-type profile. | 175 | 215 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5733g00003 | Vium-Chr5733 | 9423 | 16584 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5733g00003 | 1 | 224 | C3H Transcription Factor Family | AT5G15790 | 59.740 | 4.95e-95 | 275 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5733g00003 | - | - | gmx:100788192 | 436.802 |