Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5733g00003 ATGGGATCAGTTTGTTGCTGTTTTAATGTTGATGATTTTGAAGATTATGTGAATCCAAATAGTCCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCCTACAGAACGTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAAGCGCATGCGATTCCTTCATCTTTACAGGGCACAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATTCAGACCCCAGGTTTTTCCGTTCACAGCGAGATGGATTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATACTGACTCAGAATCTTTAAGTTTGGGTGGTAAATGGAACGATACCAGTGAAGATGGATCAAAGGAATATCGGAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACGACTGGAGCTGGGGTTGTCTATTCATCGTCGGAAGTGGAGGATGTCTGTCCAACTTGCCTTGAAGAATACACTGAAGAGAATCCAAAGATATTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAATTGTCCTGTTTGTGGGAAGGAGATGGTATTCGATGAAACGACTTAA 678 0.4174 MGSVCCCFNVDDFEDYVNPNSPVYRNCMCLSCFLQNVLTVYASIFRRGEAHAIPSSLQGTASMTSTASLDNSLSDMYRSPPRPLPYDSDPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDTDSESLSLGGKWNDTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEVEDVCPTCLEEYTEENPKILTKCSHHFHLGCIYEWMERSDNCPVCGKEMVFDETT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5733g00003 225 MobiDBLite consensus disorder prediction 91 123 - -
Vium5733g00003 225 SUPERFAMILY RING/U-box 171 222 - -
Vium5733g00003 225 CDD RING-H2_AIRP1-like 172 219 - -
Vium5733g00003 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Vium5733g00003 225 MobiDBLite consensus disorder prediction 72 148 - -
Vium5733g00003 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 223 - -
Vium5733g00003 225 SMART ring_2 175 215 IPR001841 -
Vium5733g00003 225 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
Vium5733g00003 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Vium5733g00003 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5733g00003 Vium-Chr5733 9423 16584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5733g00003 1 224 C3H Transcription Factor Family AT5G15790 59.740 4.95e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5733g00003 - - gmx:100788192 436.802