Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5733g00001 ATGTTTCTGAAATGTTTTGGTGACTCAAGTTCATCTAGGAGACAATATCCAACCGTAATAGAAGAGTTGTGCCGTCATTTTTCTCTTGCTGATATTCGGAAATCAACCAACAATTTTGATCATAACAGAGAAATTGCTGAAGGAGCAGTCGGTAAAGTATACAGAGGTTGTCTCCAACACAATGATGGTTCTTATTACGAAGTCGCAGTGAAGCGATTTCACGGGCAAAGCTGTGAAATATTAAAAAGAGAAGTAGAGTTACTGTGTCAGCTTCGCCATCCTAATTGTGTGTCTATCGTAGGATTTTGCAACCACGAAACAGAGAGCATTATTGTGTATGAGAACATGTCCAATGGATCTCTGGATCGACACCTGCGAAGTGAGGTTAGGGAAGCACTTCCATGGAAAAAAAGGATACAGATTTGCATAGGAGCGGCGCGTAGACTACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCATGACATCAAGCCTAGAAAAATTCTTTTGGACGACAACATGCACCCAAAACTCTCAGGTTTCAGCTCTAGCTTACTGGGAGCACATTTCAAGGAAAAACCAAAACCAATAAAAACGGATTTTTTAGGTACTTGTGGTTACTTACCTGTTGAGTCATTTACGACCGATAATGTCACAGATAAATGGGATGTTTACTCATTTGGTATGACTCTACTGGAAGTTGTGGGAGTAAGAAGAATTTTTGAACGGGTTTATTTTGAAATAGAAAAAGAATTACTGGAGAAGTGTATTGAGGAGAATATTGATCCGAAAATCAAAGGAGAGATTGCACCAGAGTGTTGGCAAGTCTTTATAGACATCGCCTTAAGATGCATAAATAAGCAACCTGATGAACGACCAGCAATGGGTGAAGTGGAGGTGGAACTTGAGCTTGCTCTGTTGGTGCAGGAACAAGAAGATATCATAAATACCGATAGCGATTATACCTTATTGTCCAAAACCGTTATTATCCCAAAATCAGAGGGGGGATTTGAGTATGTCATTGGCCTGAAAGAACAGGAAACCGTATACAGTGACTCAGAAGACATGTTCCATAGGCAATTTAGTGAGCTTTTGAAGTAG 1107 0.4047 MFLKCFGDSSSSRRQYPTVIEELCRHFSLADIRKSTNNFDHNREIAEGAVGKVYRGCLQHNDGSYYEVAVKRFHGQSCEILKREVELLCQLRHPNCVSIVGFCNHETESIIVYENMSNGSLDRHLRSEVREALPWKKRIQICIGAARRLHYLHAGLKRTIIHHDIKPRKILLDDNMHPKLSGFSSSLLGAHFKEKPKPIKTDFLGTCGYLPVESFTTDNVTDKWDVYSFGMTLLEVVGVRRIFERVYFEIEKELLEKCIEENIDPKIKGEIAPECWQVFIDIALRCINKQPDERPAMGEVEVELELALLVQEQEDIINTDSDYTLLSKTVIIPKSEGGFEYVIGLKEQETVYSDSEDMFHRQFSELLK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5733g00001 368 PANTHER OS07G0166700 PROTEIN 23 311 IPR045272 GO:0004714|GO:0006468
Vium5733g00001 368 SUPERFAMILY Protein kinase-like (PK-like) 12 304 IPR011009 -
Vium5733g00001 368 Gene3D Phosphorylase Kinase; domain 1 6 114 - -
Vium5733g00001 368 Pfam Protein tyrosine and serine/threonine kinase 42 302 IPR001245 GO:0004672|GO:0006468
Vium5733g00001 368 FunFam Receptor-like protein kinase ANXUR2 116 326 - -
Vium5733g00001 368 ProSiteProfiles Protein kinase domain profile. 39 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5733g00001 368 FunFam Receptor-like protein kinase ANXUR2 5 115 - -
Vium5733g00001 368 Gene3D Transferase(Phosphotransferase) domain 1 116 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5733g00001 Vium-Chr5733 4520 5916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5733g00001 21 315 Receptor kinase-like Gene Family AT3G51550 40.196 1.08e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium5733g00001 PK_Tyr_Ser-Thr 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5733g00001 - - var:108327132 476.478