Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5729g00001 ATGTTTATGAAATGTTTAGGCAACACAAGTTCTTCAAAGAAACAGTATCAAACAGTAATAGAAGAGTTGTGCCATCAGTTTTCTCTTGCAGAGATTAGAAAGTCAACCAACAACTTCGATAGAAAGAGACTAATTGGTCGTGGAGGATTTGGTGAAGTATATAAAGGCTATCTCCAACATTATGCTGCTTCTAATTACATAGTAGCAGTGAAACGGTTTTCTGTGGAACACAGTGAAGTGTTCAAGAATGAAATAGAGTTGCTCTGCCAGCTTCGTCACCCTAATTGTGTGTCTCTTATAGGATTCTGCAACCACAAGAAAGAGAAGATTGTTGTGTACGAATACATGTCCAATGAATCTCTAGATCGACACCTACAACGTGGGGAGCTGTCATGGAAGCAAAGGTTAGAGATTTGCACAGGAGCAGCGCGTGGACTACACTACCTTCATGCAGGAGCTAAGCGCACCATCATCCACCGTATAGTCAAACCTCGAACCATCCTTTTGGACGACAACATGCACCCAAAACTCACAGGTTTCTGCATTAGCGTAAAGGGGTCACGATTGATGTCAAAACCAAAGCCAATTAAAGTTGATGTTGTGGCTGGTACTCCTGGATACATGGCTAGAGAGCTTTTCACTGACGATGCCATCACAGATAAATCTGATGTTTATTCTTTTGGTATGGTTCTGCTAGAAGTTGTGTGTGGAAGGAAATACATAACAATGCCAGCTGAAAGAGAATTTCTGGAGAAGCCTGTTGAGGAAAAAGTTGATGCGAGCATCAAGGGAAAGATTGCACCAAAGTGTTGGGAAGTCTTCATAGATATCACCAAAAGATGCGTGATGTATGAACCGGATGAGCGACCAACAATGGGTGAAGTAGAGGTACAACTAGAGTATGCTTTGTCGTTGCAGGAACAGGCTGATACAAATACTAATGGTGATTATACCTTATTTTCCACCACAGTTATTCACCCAGGAGCGGAACTGATAGACAGCACAGAAGACAGTGATACTGAAGAAATGTAA 1032 0.4176 MFMKCLGNTSSSKKQYQTVIEELCHQFSLAEIRKSTNNFDRKRLIGRGGFGEVYKGYLQHYAASNYIVAVKRFSVEHSEVFKNEIELLCQLRHPNCVSLIGFCNHKKEKIVVYEYMSNESLDRHLQRGELSWKQRLEICTGAARGLHYLHAGAKRTIIHRIVKPRTILLDDNMHPKLTGFCISVKGSRLMSKPKPIKVDVVAGTPGYMARELFTDDAITDKSDVYSFGMVLLEVVCGRKYITMPAEREFLEKPVEEKVDASIKGKIAPKCWEVFIDITKRCVMYEPDERPTMGEVEVQLEYALSLQEQADTNTNGDYTLFSTTVIHPGAELIDSTEDSDTEEM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5729g00001 343 FunFam Receptor-like protein kinase ANXUR2 5 115 - -
Vium5729g00001 343 Pfam Protein tyrosine and serine/threonine kinase 42 298 IPR001245 GO:0004672|GO:0006468
Vium5729g00001 343 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
Vium5729g00001 343 ProSiteProfiles Protein kinase domain profile. 39 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5729g00001 343 Gene3D Transferase(Phosphotransferase) domain 1 116 325 - -
Vium5729g00001 343 PANTHER OS07G0166700 PROTEIN 23 306 IPR045272 GO:0004714|GO:0006468
Vium5729g00001 343 FunFam Receptor-like protein kinase ANXUR2 116 320 - -
Vium5729g00001 343 ProSitePatterns Protein kinases ATP-binding region signature. 45 71 IPR017441 GO:0005524
Vium5729g00001 343 Gene3D Phosphorylase Kinase; domain 1 3 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5729g00001 Vium-Chr5729 3637 4759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5729g00001 9 315 Receptor kinase-like Gene Family AT3G51550 41.975 2.27e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium5729g00001 PK_Tyr_Ser-Thr 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5729g00001 - - gmx:100305395 466.463