Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5728g00010 ATGGAAGGGGTTTCCAGGGAAGCCCAGATGTCGATCGCTGCTTCTTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTACTACCTTAGGAAGAAGTTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATTCGAGCCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAAATAACGAATGGTTCTTCTTCTCTCCTCGTGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGGGCAACTGAATGTGGATATTGGAAGGCCACCGGCAAAGAGCGTAATGTAAAGTCAGGTTCCAACGTTATAGGAACAAAGAGGACTTTGGTGTTTCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCACGAGTACTGCATCAATGACAAATCTCAGGATTCTTTGGTTATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATCATTCGAATAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATATCAGAAGGTGGTGGTATAGATCAAAGGAATGTTTGTGAGCAGGACAAAGAGGTGGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCCAATGAGCAGATTGATTCTGTCTCGGAATCCAATCATCGACCAGCTAATGAAGCTACACTGACAGAATCTTCAGAACAAGCAAAGGAGGTGTATGAAGAGGATTGCTATGCAGAGATACTAAAGGATGATATCATAAAACTGGACGAATCATCAATCTCAGCAGAGGGTCACACAGGAGCACAGGAACCTGCACAGATGCATCCTGCGCAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCGTTCTTCTTCTGCAGTGGTTGGTTTCCGAAGCACAATAATGCACTCTTCAAAGAGTACCTTCTTCGCCGGAATAAGCAACAGTTTGGTGGCACTTGTTTTCTTGGTTTTCACTCTGATATTTTTGGTGTTTGTTGGGTGGAGTCAGACAAGTGAAGTGTTAAGCGGTTGTAACCTATCAGGAACCATGTCGAGGCCCATGTTGCTTGTCTTCTTGCTGATTATACTTATAATAACCTCGCAGTTCGAGTGGAAGCAGCAGCTTGTGGCCGATGTTGACTCCAACCCCACCGTATCTCAGAAGCAGCATCAAATTTCCAAGGCTGAAGAAACCGTAAAGGAGAAGATTATTTTAGTTCAAGAGAAGAATATTCAAAGATTGAATGAGCTAGTACGGCATCTCCAGGAACAATTGCAACAGTGTAGAGGACGCAATGGAACTATAAATGGCACTGTAAGCCCTCTAGCTGAGCGGATTCTGGAGCTTGAGCGACAGCAAATTTTAGAGGATTAA 1431 0.4465 MEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKFEPWDLPAKSFIQSNNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNTEFRLSDHSNRASSSQRHPVNSHESGCAISEGGGIDQRNVCEQDKEVGCSSKRSSSSYGSPSNEQIDSVSESNHRPANEATLTESSEQAKEVYEEDCYAEILKDDIIKLDESSISAEGHTGAQEPAQMHPAQGTAQRRIRLRVGNSKRSSSAVVGFRSTIMHSSKSTFFAGISNSLVALVFLVFTLIFLVFVGWSQTSEVLSGCNLSGTMSRPMLLVFLLIILIITSQFEWKQQLVADVDSNPTVSQKQHQISKAEETVKEKIILVQEKNIQRLNELVRHLQEQLQQCRGRNGTINGTVSPLAERILELERQQILED 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5728g00010 476 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 237 - -
Vium5728g00010 476 Gene3D NAC domain 26 176 IPR036093 GO:0003677|GO:0006355
Vium5728g00010 476 MobiDBLite consensus disorder prediction 165 194 - -
Vium5728g00010 476 MobiDBLite consensus disorder prediction 166 182 - -
Vium5728g00010 476 MobiDBLite consensus disorder prediction 208 247 - -
Vium5728g00010 476 Coils Coil 423 450 - -
Vium5728g00010 476 MobiDBLite consensus disorder prediction 209 246 - -
Vium5728g00010 476 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
Vium5728g00010 476 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Vium5728g00010 476 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Vium5728g00010 476 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5728g00010 Vium-Chr5728 64861 74270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5728g00010 4 275 NAC Transcription Factor Family AT2G27300 54.710 2.77e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5728g00010 NAM 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5728g00010 - - tpra:123896537 688.337