Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5728g00001 ATGGCAGATCTCCCACCTGGTTTTCGATTCTACCCGACAGAGGAAGAGCTCGTTGCCTTCTATCTGCACAACCAGCTCGAGGGACAAAGACACGACACCAGCAGGGTTATTCCAGTCATTGAAATCAATGGCGTAGAGCCTTGGAACCTCCCAACACTTGCAGGGGAGCGTTGTCGTGGAGACACGGAGCAATGGTTCTTCTTTTCGCCCAGACAAGAGAGAGAGGAGAGAGGAGGTAGACCCAACAGAACCACCGCAAGTGGGTACTGGAAAGCCACCGGCTCTCCTTGCCACGTTTACTCTTCCGACAACAAAGTCATCGGGATGAAGAAAACCATGGTGTTTTACAAAGGGAAGGCTCCATCCGGAAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTCAACACTCTCACCAATCCAACGCAACCCCTCCCAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTTATATCGGGAAGCTTTAGATCGTTTGATCGACGACCACTAGAGATTGGAAGAGCTGAGTTACGAGTTGACGGTGATAGAGGTGGTGCTGCTTCAACAAGTGGTCAAGAGAGAGCAGCGGTGGTGGATGGATCAAGCTCTCCCGATACCGGTCACTCCGGTGATGGTCATATCCATGAGGCTGAAGCTGGAGAAGGGTCAAGTGGTACACATTGTAATACAAGCAATAGGGTTGAGGAACCACTCTGGGAATGGGAACACTTAATTGGACATGAGCCTTATGTCAAGCATGCTTGA 774 0.4987 MADLPPGFRFYPTEEELVAFYLHNQLEGQRHDTSRVIPVIEINGVEPWNLPTLAGERCRGDTEQWFFFSPRQEREERGGRPNRTTASGYWKATGSPCHVYSSDNKVIGMKKTMVFYKGKAPSGRKTKWKMHEYKAIQHSHQSNATPPKLRHEFSLCRVYVISGSFRSFDRRPLEIGRAELRVDGDRGGAASTSGQERAAVVDGSSSPDTGHSGDGHIHEAEAGEGSSGTHCNTSNRVEEPLWEWEHLIGHEPYVKHA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5728g00001 257 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Vium5728g00001 257 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Vium5728g00001 257 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Vium5728g00001 257 MobiDBLite consensus disorder prediction 197 211 - -
Vium5728g00001 257 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 179 - -
Vium5728g00001 257 MobiDBLite consensus disorder prediction 184 234 - -
Vium5728g00001 257 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5728g00001 Vium-Chr5728 1082 2674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5728g00001 1 247 NAC Transcription Factor Family AT5G22380 56.225 2.71e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5728g00001 NAM 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5728g00001 - - gmx:100784960 419.468