Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5725g00001 ATGAAGAAAACCCCAGTTCACAGTTTGCATCAATCTAATCAAAGAAAAAGGAATGTTGGTGTCCAAGATAGAGGTGCAGGGAATGGCACACGGAAGCGCAGTGATGAGAACCATTCTGTTCTGACATATTTCAATTCCGTCAAGAATTTTTTTTCATTTTTTCTATCTGGGAAAAAAAAAATTCCCTCAGAAGCCCCTCAGAGTGATGACGGAAAGACCACACACAAGGTTGGAGGGGTATCGTCTTCCGCAGATGTATCGTCTGATAGTTCTAGGAGTTCATCAAAGTATGTATTCTCTCAATCCTCTGCATCATCTGGCACTTCAAGTAGCCAGCTTGGAGTTGGGAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAATTCTCTCCGGACAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTATAGGGGAAGGCTTTATGATGGATCCCTCGTGGCTGTGAAGCGTGCCAGGAAGGATTTGCAGAACAAGAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTATCAAATATTGAGCACAGGAGCCTTGTGAGGTGGCGTGGGTATTTGGAGCATGGAGATGAAAAGATTCTTGTTGTTGAATATGTTAGTAATGGAACTCTTCGAGAACATTTAGATGGTTTTCGGGGAAATGGACTTGAAATTGGTGAGCGTCTGGACATAGCCATTGATGTAGCTCATGGAATTACTTATCTTCACATGTACACAGATCATCCAATTATTCATAGGGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGGGCCAAAGTAGCAGACTTTGGTTTTGCTAGGTTGGGTTCAGAAGACCCTGCTGCAACCCATATTTCAACTCAAATAAAAGGAACAGCTGGGTACATAGATCCTGATTACATGAGAACCCATCATCTATCTGAAAAGAGTGATGTCTATTCCTTTGGTGTGTTGCTTGTTGAAATGATGACAGGACGACATGCAGTTGAACCAAAGAGACCTCTTAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGTTGAAACAAGGAGAAGTTGTGATTGCCATGGATCCAAGACTAAAGAGAAGTCCAGCATCAAACAAAGCAGTACAAAAGGTTATGAAGCTAGCTTTCCAATGCCTTGCACCGGTGAGGCGATCACGACCATCTATGAAGAGTTGTGCAGAGGTTCTGTGGGAAATCCGCAAAGATTTTACAGATAGAACATCTTCTCACACTCATAATGGTTCTCACCATTCTGCAAATTTCCCTCAAAGAGATGGGAGGAAGAATAGGCATAAGACATATGGTATTGAAGATGGTAAAGGCTATAAGTTTGTATCGGCATAA 1365 0.4147 MKKTPVHSLHQSNQRKRNVGVQDRGAGNGTRKRSDENHSVLTYFNSVKNFFSFFLSGKKKIPSEAPQSDDGKTTHKVGGVSSSADVSSDSSRSSSKYVFSQSSASSGTSSSQLGVGNFTFEEIYKATAKFSPDNKIGEGAFGTVYRGRLYDGSLVAVKRARKDLQNKNLAEFKNEINTLSNIEHRSLVRWRGYLEHGDEKILVVEYVSNGTLREHLDGFRGNGLEIGERLDIAIDVAHGITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGSEDPAATHISTQIKGTAGYIDPDYMRTHHLSEKSDVYSFGVLLVEMMTGRHAVEPKRPLSERVTIKWAMQLLKQGEVVIAMDPRLKRSPASNKAVQKVMKLAFQCLAPVRRSRPSMKSCAEVLWEIRKDFTDRTSSHTHNGSHHSANFPQRDGRKNRHKTYGIEDGKGYKFVSA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5725g00001 454 Pfam Protein tyrosine and serine/threonine kinase 133 403 IPR001245 GO:0004672|GO:0006468
Vium5725g00001 454 ProSiteProfiles Protein kinase domain profile. 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5725g00001 454 SMART serkin_6 130 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5725g00001 454 MobiDBLite consensus disorder prediction 428 442 - -
Vium5725g00001 454 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 94 206 - -
Vium5725g00001 454 Gene3D Transferase(Phosphotransferase) domain 1 207 428 - -
Vium5725g00001 454 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 107 422 - -
Vium5725g00001 454 Coils Coil 162 182 - -
Vium5725g00001 454 MobiDBLite consensus disorder prediction 413 442 - -
Vium5725g00001 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vium5725g00001 454 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Vium5725g00001 454 SUPERFAMILY Protein kinase-like (PK-like) 107 406 IPR011009 -
Vium5725g00001 454 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 207 417 - -
Vium5725g00001 454 MobiDBLite consensus disorder prediction 62 93 - -
Vium5725g00001 454 MobiDBLite consensus disorder prediction 74 93 - -
Vium5725g00001 454 Gene3D Phosphorylase Kinase; domain 1 90 206 - -
Vium5725g00001 454 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5725g00001 Vium-Chr5725 1309 4631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5725g00001 103 407 Receptor kinase-like Gene Family AT2G23450 43.831 9.05e-67 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vium5725g00001 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5725g00001 - - gmx:100815871 707.597