Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5719g00001 ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCAGAGCCGCACCATACGGCATGGGGCGGGAGATACCTCGGCGTGCGGCGGAGGCCGTGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCAACCAAGGAGCGGCACTGGCTGGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACCGAGCCGCACGTGCCATGCGCGGATCACGTGCGCGCACCAACTTCGTCTACGCCGACACCACTCCCGGCTCATCCCTCACCCCCATCATCTCCCCCGACCAACAACCCCTCCCTCAACCCGACCCGGTTCTAACCCTGGACCCGTTTTCCCTGCTGGGGTTTTCCTCCGGTTCTTCCTCCTACGATGAAAATGCCTCGGCCAACGTGGCAGCCTCCCACTTCAGCCAACAACCGTTTTTCGCAAATAATGATAACAATAATTATTACAATAATAAGAATGATAATGAGAACAGTGGGAGCACGGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCCATGGGTTACGTGATGGAACAGCAGAGTGATGGATTTTATTGGGAGAGTAGTCCAATGTTGGGTGCAATGTCAACAGTGTCAGAGAATGTTAGTGCAGAGTCTGAAGTTTTTGAGTTGGGGAGCTCCTCCTACTTCTTCTTCTGA 696 0.5589 MNPRTTSSSSKTKKKQTAPEPHHTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSLTPIISPDQQPLPQPDPVLTLDPFSLLGFSSGSSSYDENASANVAASHFSQQPFFANNDNNNYYNNKNDNENSGSTVELPPLPPDITSSMGYVMEQQSDGFYWESSPMLGAMSTVSENVSAESEVFELGSSSYFFF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5719g00001 231 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vium5719g00001 231 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Vium5719g00001 231 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Vium5719g00001 231 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vium5719g00001 231 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vium5719g00001 231 MobiDBLite consensus disorder prediction 154 175 - -
Vium5719g00001 231 MobiDBLite consensus disorder prediction 1 29 - -
Vium5719g00001 231 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Vium5719g00001 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 157 - -
Vium5719g00001 231 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vium5719g00001 231 MobiDBLite consensus disorder prediction 154 172 - -
Vium5719g00001 231 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Vium5719g00001 231 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5719g00001 Vium-Chr5719 17408 18495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5719g00001 7 185 AP2-EREBP Transcription Factor Family AT5G13910 49.727 3.33e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium5719g00001 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5719g00001 K09286 - gmx:100792421 246.128