Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5718g00003 ATGATCTTTTTGCTGACTGTGAGTAATTCTGCTACTTGCTATACTTGTTTGTTCAACATCTTTAGGGGAAGCAGAATGGGATCTGGCACTGAGGTTCACTCAGTGGTGGAGTTCAGTCTGGATGCAAAGTGGCTTATAGATCCAAAGCAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCCCATGCCAAAGTGTACGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATTAATAAGGGTGAAACCCCAGAACAGATTTCTAGGAGAGAGGCTCGGTTTGGCAGAGAAATTGCAATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGTTTATTGGGGCTTGCAAAGAACCAGTTATGGTTATTGTAACTGAACTTCTGTTAGGGGGAACATTGCGCAAATACCTGTGGGGTATCCGTCCAAACTGCTTGGATATGCGTGTGGCAGTTGCATTTGCTCTTGATATTGCGCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCATCGTGACCTTAAACCTGGTATTTTTATAAGATTATCAAACTTGCTAGTGTTGTAA 573 0.4066 MIFLLTVSNSATCYTCLFNIFRGSRMGSGTEVHSVVEFSLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFGREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWGIRPNCLDMRVAVAFALDIARAMECLHSHGIIHRDLKPGIFIRLSNLLVL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5718g00003 190 ProSiteProfiles Protein kinase domain profile. 51 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5718g00003 190 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 44 178 - -
Vium5718g00003 190 ProSitePatterns Protein kinases ATP-binding region signature. 57 78 IPR017441 GO:0005524
Vium5718g00003 190 SUPERFAMILY Protein kinase-like (PK-like) 33 179 IPR011009 -
Vium5718g00003 190 Gene3D Transferase(Phosphotransferase) domain 1 127 189 - -
Vium5718g00003 190 Gene3D Phosphorylase Kinase; domain 1 39 126 - -
Vium5718g00003 190 Pfam Protein tyrosine and serine/threonine kinase 54 176 IPR001245 GO:0004672|GO:0006468
Vium5718g00003 190 FunFam Kinase suppressor of Ras 1 40 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5718g00003 Vium-Chr5718 1646 8155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5718g00003 26 182 MAP Kinase Kinase Kinase AT3G27560 76.433 6.65e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium5718g00003 PK_Tyr_Ser-Thr 9.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5718g00003 - - vum:124841515 382.489