Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5718g00002 ATGGGATCTGGCACTGAGGTTCACTCAGTGGTGGAGTTCAGTCTGGATGCAAAGTGGCTTATAGATCCAAAGCAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCCCATGCCAAAGTGTACGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATTAATAAGGGTGAAACCCCAGAACAGATTTCTAGGAGAGAGGCTCGGTTTGGCAGAGAAATTGCAATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGTTTATTGGGGCTTGCAAAGAACCAGTTATGGTTATTGTAACTGAACTTCTGTTAGGGGGAACATTGCGCAAATACCTGTGGGGTATCCGTCCAAACTGCTTGGATATGCGTGTGGCAGTTGCATTTGCTCTTGATATTGCGCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCATCGTGACCTTAAACCTGGTATTTTTATAAGATTATCAAACTTGCTAGTGTTGTAA 498 0.4116 MGSGTEVHSVVEFSLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFGREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWGIRPNCLDMRVAVAFALDIARAMECLHSHGIIHRDLKPGIFIRLSNLLVL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5718g00002 165 Gene3D Transferase(Phosphotransferase) domain 1 102 164 - -
Vium5718g00002 165 Pfam Protein tyrosine and serine/threonine kinase 29 151 IPR001245 GO:0004672|GO:0006468
Vium5718g00002 165 SUPERFAMILY Protein kinase-like (PK-like) 13 154 IPR011009 -
Vium5718g00002 165 ProSiteProfiles Protein kinase domain profile. 26 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5718g00002 165 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 19 153 - -
Vium5718g00002 165 Gene3D Phosphorylase Kinase; domain 1 14 101 - -
Vium5718g00002 165 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Vium5718g00002 165 FunFam Kinase suppressor of Ras 1 15 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5718g00002 Vium-Chr5718 1645 8155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5718g00002 1 157 MAP Kinase Kinase Kinase AT3G27560 76.433 6.12e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium5718g00002 PK_Tyr_Ser-Thr 6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5718g00002 - - vum:124841515 332.028