Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5715g00004 ATGCTCCGCCGCGCAACCTCCGCCCTCCTCTCCGGAGCCTCCCGCCGGCGCTTCTCCACCGACGTACCGGCAACGCCCTCGGCGGAATCGAGCTTCGTGGAGGCGTGGAAGAAAGTGAGCCCGAATCTGGATCCTCCGAAGACGCCGCTCTCGTTCTTGAAGGAGCGGCCGCCGATTCCCTCGACCCTCCCTTCCAAACTCACAGTCAACTTCGTCCTCCCCTACGCTTCCCAATTGTCCGCAAAAGAGGTTGACATGGTGATTGTACCAGCAACAACTGGGCAGATGGGTGTTCTGCCAGGACATGTAGCAACAATTGCTGAGTTGAAACCTGGTGTCCTCTCTGTTCATGAAGGGAACGATGTGACAAAGTATTTTGTCAGCAGTGGCTTTGCATTCATCCACGCGAACTCTGTTGCTGACATAGTAGCTGTTGAGGCCGTGCCGATAGATCGGATTGATGCAAATCTTGTTCAGAAGGGCCTTCAAGATTTCACCCAGAAGCTCAACTCAGCCTCAACTGACTTGGAGAAAGCTGAGGCTCAGATTGGGGTGGACGTCCACAGCGCTCTCAACTCTGCTCTTACAGGCTGA 594 0.5522 MLRRATSALLSGASRRRFSTDVPATPSAESSFVEAWKKVSPNLDPPKTPLSFLKERPPIPSTLPSKLTVNFVLPYASQLSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADIVAVEAVPIDRIDANLVQKGLQDFTQKLNSASTDLEKAEAQIGVDVHSALNSALTG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5715g00004 197 Coils Coil 162 182 - -
Vium5715g00004 197 CDD F1-ATPase_delta 67 190 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vium5715g00004 197 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 67 139 IPR020546 GO:0015986
Vium5715g00004 197 FunFam ATP synthase delta 56 153 - -
Vium5715g00004 197 Gene3D - 58 153 IPR036771 -
Vium5715g00004 197 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 26 197 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vium5715g00004 197 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 67 148 IPR036771 -
Vium5715g00004 197 Gene3D - 154 196 - -
Vium5715g00004 197 Hamap ATP synthase epsilon chain [atpC]. 65 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vium5715g00004 197 NCBIfam ATP synthase F1 subunit epsilon 72 182 IPR001469 GO:0015986|GO:0045261|GO:0046933
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5715g00004 1 197 Primary Pumps ATPases AT5G47030 69.192 1.96e-100 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5715g00004 K02134 - gmx:100780778 357.066