Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5715g00001 ATGGAAGACTCGTGGGAAAATTGGATTTCTTCTTTGGAAATGGCCGAAGACAACTCCACAGATCATTCTCACATCAATGAAGATAACTTCCTCACTGGGATTGTTCTTGAACCACTAGATTTCTCATTTCTTAACTCTTCTACCACCACCACCATGCTCTCATATGATGATAATCATGATAATAGTAACAGTAACAATGTTTTTTCCATGGAAAGTAGCTATGAAAATGCAAACTTTGATGAGAGGCATGGGAAAATGCTCAAGAGTAATAGCTCAAGCTCCATCATTTCTCATGATGTAGCTAACAACAATGCTTCTTCTTCTTCTTCAGCACCATCCTCATCCACCTTCATCTTGTCCTTTGAAAACTCAACCATGGAACCTTCTCATCATAGACCTAATAAAGATCATGGTAGTTGCCCTAGGAATGCCCTATGTTCTTCACTTTTGAGCTCAGAGAATGATCATCTCAGCACACCAAAGGCCAAACAAGGTGCCAAGAAGTATAGAAGCTCATCTGAGATTCAAGATCACATCATGGCTGAGAGAAAAAGGAGACAGGAACTCACTGAAAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCCTATATACTAAGGGAAGCAATGATATACATGAAAGAACTTCAAGAGAGAGTGATAGAGCTAGAAAAGCAGAACAAGAGGAAGAGAAGTACAGAATCAAGAATATTGATAAAGAAATATTCGCAAAGAGAAGAAGAAAGATCAACTCATGCACTTCCTCATGTTGAAGCAAGAGTGTTGGAAAAGGAGGTTCTCATTGGAATCCATTGCCACAAACAAAAGGACATTGTGCTCAAAATCATGGCTTTGCTCCAAAATCATCATCTTTCTCTTGCTAGCAGCAGTGTCTTGCCCTTTGGAACTTCCACTCTTAAAGTCACAATCATTGCCCAGATGGACGAACAATACTGCATGACAGTGAATAATCTTGTAAAAAGCCTGAGACAAGCTCTCTTGAAAATCACATGA 1032 0.3973 MEDSWENWISSLEMAEDNSTDHSHINEDNFLTGIVLEPLDFSFLNSSTTTTMLSYDDNHDNSNSNNVFSMESSYENANFDERHGKMLKSNSSSSIISHDVANNNASSSSSAPSSSTFILSFENSTMEPSHHRPNKDHGSCPRNALCSSLLSSENDHLSTPKAKQGAKKYRSSSEIQDHIMAERKRRQELTERFIALSATIPGLKKTDKAYILREAMIYMKELQERVIELEKQNKRKRSTESRILIKKYSQREEERSTHALPHVEARVLEKEVLIGIHCHKQKDIVLKIMALLQNHHLSLASSSVLPFGTSTLKVTIIAQMDEQYCMTVNNLVKSLRQALLKIT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5715g00001 343 Pfam Helix-loop-helix DNA-binding domain 177 223 IPR011598 GO:0046983
Vium5715g00001 343 SMART finulus 179 228 IPR011598 GO:0046983
Vium5715g00001 343 Gene3D - 164 239 IPR036638 GO:0046983
Vium5715g00001 343 PANTHER BHLH TRANSCRIPTION FACTOR 60 341 - -
Vium5715g00001 343 Coils Coil 212 239 - -
Vium5715g00001 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 237 IPR036638 GO:0046983
Vium5715g00001 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Vium5715g00001 343 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5715g00001 Vium-Chr5715 9079 13616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5715g00001 8 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.159 6.88e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5715g00001 HLH 6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5715g00001 - - vra:106773267 564.688