Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5714g00006 ATGTCTGCCTCCAGAAAGAAGCTTCTTCTCAACACAGTGTCCGTGAAACTTGGCTGCGGCACCTGCAGAGGGCCAAAACTCTATCGCATATTCCATCCAAAGCCTAAACCCACGAAGCTCCCCTCTTACCAAAACCACAAAAACCACTACAACCATTTCTCTTCTTCCTCTTCTTCAGCCCAATGGGCTGACAGCACCAACACCACCCCCACCAACACCAACACCAACACCACATTCTCTCCCTACGTTGATTCCTCCCACTTTTCTGACTCCGACGTCAAGGCTGCAAGAACAGTGGGGGGTTTGGGAAGAGCTGGCAAAGAAGGGGTGGCGGTGGAGAAAGACTCCGATGACCCTTATCTTGACTTCAGACATTCCATGCTGCAAATGATATTGGAGAACGAGATATACTCCAAGCAAGATCTCAGAGACCTTCTCAGTTGCTTCCTTCAGCTCAATTCACCGCACCATCATGGCGTTATAGTCAGGGCTTTCACTGAGATCTGGAATGGCGTCTTCTCTGGCAGACCCAATTCACACATCAACCGTAAGCCACGTCAGTTCTAA 567 0.4974 MSASRKKLLLNTVSVKLGCGTCRGPKLYRIFHPKPKPTKLPSYQNHKNHYNHFSSSSSSAQWADSTNTTPTNTNTNTTFSPYVDSSHFSDSDVKAARTVGGLGRAGKEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRDLLSCFLQLNSPHHHGVIVRAFTEIWNGVFSGRPNSHINRKPRQF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5714g00006 188 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 46 174 IPR038933 GO:0045892
Vium5714g00006 188 MobiDBLite consensus disorder prediction 41 78 - -
Vium5714g00006 188 MobiDBLite consensus disorder prediction 33 78 - -
Vium5714g00006 188 NCBIfam uncharacterized plant-specific domain TIGR01568 110 170 IPR006458 -
Vium5714g00006 188 ProSiteProfiles OVATE domain profile. 112 171 IPR006458 -
Vium5714g00006 188 Pfam Transcriptional repressor, ovate 116 172 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5714g00006 Vium-Chr5714 50000 50902 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium5714g00006 Ovate 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5714g00006 - - gmx:100804319 271.937