Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium570g00001 ATGGGTAGCTTCAGCGAAGACGATGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTTTGTCTATAGCGGATGATGAAGGGGTATCCAATGCTTTCGATTATGGATTGTGGATTCGGAGTCCAAGGAGTGTTAGAGAGCGTAAGGGCAGGTTTATGAAGAGTATGGGACTGAGTAGCATGGATTTGACTGCCCTAGGAACTGAAAATTCAGTAGATGTGGGTAGTGTTCTGTGTGAAGAGGGAAATGATAGAGTTGAATTTACTAGTGGGTCTGTGACCCGAAATTGTGTTGTGGAAGAAGAATTCTGTTCAAGCCGGACATCAATGTCTTGTTTGCATAGGGAGGATTCTTCAGAGGAGCTTGGTTTAGTGGATAACTCGCCGTGTGGAAATGAGAATTTGGAGGGTAATGTGGATCAAGAGGGGCTGGAGAGTAGGGAGATGAGTGATGGAAGAGATCTGGATTCAGATCGATTGGTGGTTATGGCAGAGCCTAAGGATTCAGGGAATGGCTTTAGGGAAACGGATGCCAATGCTTCTGTTCGGAGGACAAAGGGTTGGTTCAGGAAATTGCGGTCAATATCATGCATGGTTAATAGTCATGGGGAAGGTGATTTTGGAAGAGGAGAAGGCCTCGATGAAATGCCAGGGTGTAGGCTTCCGAAAGTTAAGGTCCGTCAGTCAAAGAAGCCAATGAAGGAACTTTCAGCTCTTTACATGAGGCAAGATATCAAAGCTCATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAGTTGATATTCCAGAAATTGATCCATCTTGCATTTATTTCACTGTGAATAATCTCTCTGAATTGACACCACTATTTATTGATAAAGAAAAGATTAGCAAACTGAAGAACCTGAAAAAAACATCAGATTCTGCTTGTGTAGTTTTTCCTCCTAAGATCTTCCGGTTGTTGGAGAAACCATTGCGTGAATTTCATGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGACTATGGCAAGTGAATAATGACCGTTGCTTGAAGGTTTTCTCACACAGTAATTATGTGACGTGCATACAATTCAATCCTGTGGATGATAACTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGGCAATTTCTGATTGTCACGTTGTTGATTGGATTAGTATCAAAGATATAGTGACTGCAGTATGCTATCGGCCTGATGGGCAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGTCGATTTTACAATGTATCAGAGAATCGCTTGCAGTTAGATTCCCAACTATGCTTAATTGGTAAAAAGAAGCTTGTTGGCAGAGGGATTACTGGGTTTCGGTTTCTTCCACAAGACTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGACGGCCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACAGGGAGCCCAATATGTGCATCGTTTACTTCTGATGGGAAACATATTCTATCAGCATGTGAGGACTCTAACGTATACCTATGGAATGTTAGTGAGGAAGAGTCTTCTAATCCTGTGAAAGCTAAGAAGATTACATCTTGTGAGCGGTTTTGCTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTAAAAATATTGAAAATAAACATCAGTTGAACTTGTTGGATAAAGGATCATCTCAAGTTATTCAACTTAATCCACCTGCTTCCTTCTCTCTGAGCCAAGAGTTTGTTTTGGAGTCTTTTTCAAAGGGGTCTGCAACTTGGCCCGAGGAGAAGCTTCCTGTTTCAAGCTCAAAGGTGAAAACATCACTGATTCACCAATCCGAATACAATTTCTTGATGTCTTCTTGCAAGAGTACCTCATCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGCTGGGATGGCAGGATAAAAGCATTCCACAATTATGGGCTACCTATACCCGTTTGA 2100 0.4238 MGSFSEDDECRFFDAQEDVLSIADDEGVSNAFDYGLWIRSPRSVRERKGRFMKSMGLSSMDLTALGTENSVDVGSVLCEEGNDRVEFTSGSVTRNCVVEEEFCSSRTSMSCLHREDSSEELGLVDNSPCGNENLEGNVDQEGLESREMSDGRDLDSDRLVVMAEPKDSGNGFRETDANASVRRTKGWFRKLRSISCMVNSHGEGDFGRGEGLDEMPGCRLPKVKVRQSKKPMKELSALYMRQDIKAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFIDKEKISKLKNLKKTSDSACVVFPPKIFRLLEKPLREFHGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNNDRCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAISDCHVVDWISIKDIVTAVCYRPDGQGGIIGSLAGNCRFYNVSENRLQLDSQLCLIGKKKLVGRGITGFRFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPICASFTSDGKHILSACEDSNVYLWNVSEEESSNPVKAKKITSCERFCSNASVAVPWHGLKSKNIENKHQLNLLDKGSSQVIQLNPPASFSLSQEFVLESFSKGSATWPEEKLPVSSSKVKTSLIHQSEYNFLMSSCKSTSSAHAWGMVIVTAGWDGRIKAFHNYGLPIPV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium570g00001 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 563 IPR001680 GO:0005515
Vium570g00001 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Vium570g00001 699 SMART WD40_4 341 379 IPR001680 GO:0005515
Vium570g00001 699 SMART WD40_4 473 513 IPR001680 GO:0005515
Vium570g00001 699 SMART WD40_4 645 691 IPR001680 GO:0005515
Vium570g00001 699 SMART WD40_4 237 276 IPR001680 GO:0005515
Vium570g00001 699 SMART WD40_4 423 462 IPR001680 GO:0005515
Vium570g00001 699 SMART WD40_4 514 554 IPR001680 GO:0005515
Vium570g00001 699 SMART WD40_4 382 421 IPR001680 GO:0005515
Vium570g00001 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 420 - -
Vium570g00001 699 Gene3D - 227 590 IPR015943 GO:0005515
Vium570g00001 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 277 - -
Vium570g00001 699 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Vium570g00001 699 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vium570g00001 699 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Vium570g00001 699 Pfam WD domain, G-beta repeat 343 378 IPR001680 GO:0005515
Vium570g00001 699 Pfam WD domain, G-beta repeat 244 275 IPR001680 GO:0005515
Vium570g00001 699 Pfam WD domain, G-beta repeat 384 420 IPR001680 GO:0005515
Vium570g00001 699 Pfam WD domain, G-beta repeat 528 554 IPR001680 GO:0005515
Vium570g00001 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 277 IPR001680 GO:0005515
Vium570g00001 699 PANTHER WD REPEAT DOMAIN 44 5 696 IPR040324 -
Vium570g00001 699 SUPERFAMILY WD40 repeat-like 239 689 IPR036322 GO:0005515
Vium570g00001 699 MobiDBLite consensus disorder prediction 125 152 - -
Vium570g00001 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 382 - -
Vium570g00001 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 388 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium570g00001 Vium-Chr570 10699 14933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium570g00001 244 448 U-box Gene Family AT2G33340 24.464 6.80e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium570g00001 - - gmx:100807177 1159.82