Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5708g00002 ATGGTGTTAGAAATTTCTGGGTCAATGGCCATTCGTGTCATTGCTGATATCAGCCCAATAGATCTTAAATCATCAAATATTTTGCTTGGGTATGACTTTAGAGAAAAAGTCTCGGATTTTGGATTGGTAAAACTTGCCCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCAGCAGAATATGCAGTGATAGGAAAAGTTACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTTCTAATGGAGCTGTTAATTGGATTAATGGCACTTGATGAAGATAGACCTGAGGAAAGCCAGTACTTGGCATCGTGGTTCTGGCATGTAAAATCAGACAAGGAGAAACTAATGACTGCTGTTGACCCTGCCCTTGACATAAAGGAAGAGATGTTCGATATTGTCTCCATCATTGCCGAGTTAGCTGGGCACTGCACTACCAGGGAACCAAACCAAAGGCCAGATATGAGTCATGTTGTGAATGTGAGTAGTGAGGGTGAGGGAGGAAGAATGAGAATGGCCACTTCAGTGTCAGATTTTTATTGA 561 0.4242 MVLEISGSMAIRVIADISPIDLKSSNILLGYDFREKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAAEYAVIGKVTTKADVFSFGVVLMELLIGLMALDEDRPEESQYLASWFWHVKSDKEKLMTAVDPALDIKEEMFDIVSIIAELAGHCTTREPNQRPDMSHVVNVSSEGEGGRMRMATSVSDFY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5708g00002 186 Pfam Protein kinase domain 20 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5708g00002 186 SUPERFAMILY Protein kinase-like (PK-like) 21 166 IPR011009 -
Vium5708g00002 186 PANTHER OSJNBA0070M12.3 PROTEIN 21 169 - -
Vium5708g00002 186 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5708g00002 186 Gene3D Transferase(Phosphotransferase) domain 1 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5708g00002 Vium-Chr5708 12992 15011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5708g00002 21 166 Receptor kinase-like Gene Family AT4G02010 43.537 2.47e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium5708g00002 Pkinase 2.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5708g00002 K00924 - vum:124841482 365.155