Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5695g00003 ATGGGAGGAATCTTAGACAGTACTAGGTTGTGTGGTTCTCCTACGGTAGTTGAGGTTTTTCAAAAGGTATTTGCAGAGTTGATAGGGTCATATTTTTTAGTGTTTGCTGGGTGTTGCTCTGTGGTTCTTAATAATTCAGAAAAGACAAAAGGCCAAATAACATTTCCGGGAGTTTGCGTAGTGTGGGGTTTCACAGTAACCATCTTGGCTTATTCTCTTGCTCATGTCTCTGGTGCTCATTTCAATCCTGGAGTCACTCTCAGCTTAGCTATCTATCGTCGTTTCCCTTTCAAAATGGTGCCTTTGTATTTTATTGCGCAAATATTGGGATCTTTCCTTGCCAGTGGGACGTTGTACCTTCTGTTTGAAGTAGACGATAATTCTTATTTCGGAACAAGACCGGCAGGATCTCCAGTTCAATCTCTTGTTTTTGAGTTACTTGCAACATTTTTATTAATGTTCGTTATCTGTGCGGTTTCAACGGATAAAAGAGCGATTGGAAAATTAGGAGGGGTTGTTGTTGGTATGACAGTTACAGTAGACGTCTTCATTGCTGGACCTGTGTCAGGAGCTTCTATGAACCCAGCTAGAAGCCTTGGACCTGCTTTGGTGATGAACGTTTACACTGGATTTTGGATTTATATAGTTGGACCATTTGTTGGTGCCATACTAGGTGCAACGTGTTATAACTTTATTAGACATACCGATTGTAACCCTCCGATTTAG 726 0.4105 MGGILDSTRLCGSPTVVEVFQKVFAELIGSYFLVFAGCCSVVLNNSEKTKGQITFPGVCVVWGFTVTILAYSLAHVSGAHFNPGVTLSLAIYRRFPFKMVPLYFIAQILGSFLASGTLYLLFEVDDNSYFGTRPAGSPVQSLVFELLATFLLMFVICAVSTDKRAIGKLGGVVVGMTVTVDVFIAGPVSGASMNPARSLGPALVMNVYTGFWIYIVGPFVGAILGATCYNFIRHTDCNPPI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5695g00003 241 SUPERFAMILY Aquaporin-like 18 237 IPR023271 -
Vium5695g00003 241 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5695g00003 241 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5695g00003 241 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5695g00003 241 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5695g00003 241 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5695g00003 241 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5695g00003 241 Gene3D Glycerol uptake facilitator protein. 8 239 IPR023271 -
Vium5695g00003 241 PANTHER AQUAPORIN NIP2-1 11 236 IPR034294 -
Vium5695g00003 241 Pfam Major intrinsic protein 17 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5695g00003 241 NCBIfam MIP family channel protein 25 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5695g00003 Vium-Chr5695 19112 20957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5695g00003 1 236 Major Intrinsic Protein MIP AT5G37810 58.051 1.70e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5695g00003 K09874 - gmx:100819179 379.022