Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5693g00002 ATGTATATGTGGAAGACAGNGACACCAAAGGGGACTCCTTTGAGGGATGAACTACGTATTAATGAGGACATGAATATGCATGAAAGCACTAAACGTGAGCTGCAGAGACAGGCTGATATGAGAAGAAGTCTGCGTTCTGGTTTAGGAAGCCTTCCTCAGCCCAAGAATGAGTACCAAATAGTGATGGAACCAGTCACAGAAGATGCCGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGACAGGATAGCTAGAGAAAAAGCAGAAGAAGAGGCAAGACAGGAGGCATTACTTAGAAAACGATCAAAGGTCCTTCAACGGGAACTTCCTAGGCCCCCTGCTGCTTCATTGGAGCTTATAAGAAATTCCTTAATTAGATCTGATGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAGGCTGATGAGATGATTAGAAAGGAGCTTCTAACTTTACTGGAGCATGACAATGCTAAGTATCCGCTTGATGATAAAGTGAATAAGGAGAAAAAGAAAGGAGTCAAGCGATCTGCAGATTTGTCTGCGGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAAGTCCAATATCTTTGTGCCGCAATGGGACATGAAAATGAGCCCCTTGAAGAATTTATTGAAGCACATCGAACCTGCCTCAATGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTCTCCAGTGTTGCTGGGAACATGGAAAAACTAGCTGCTTTGCAAAATGAATTTGAGAATGTGAGAAAGAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGACTGTTATCACACAAGGCTACGAGATGAGAGCAAAGAAAAGTATCTGGCAGCAAATTGAGGCCACTTTCAAGCAGATGGATATAGCTGCAACCGAGTTAGAATGCTTTAAAGCTTTGCAAAATCAGGAGCAGTTAGCAGCATCCCACAGGATAAACAATTTGTGGAGTGAAGTACAGAAGCAAAAGGAACTTGAAAAAACTTTGCAAAACAGGTACGGGAGTCTAATTGAAGAGCTGGAGAAGATGCAAAATATCATGAACCAATCCAGATTAAAGGCAGAGCAGCAAAAAGAAATTGAAGCAAACAATGCTCATGCTGAGACCAAAGTCAATGAAACTGATGTGCAGGATACCGGGAGTATTGTACCTCACTCAGCAGAGGATGGAAATGCTCAAGCAATAACAGTCGAGTCATCACATGATGGAACTTCTGACCAGCAAGTTGAGATTATGCAAGACAAGTCGACTTCTAGCCCCAGCCATGACATGAATGTGGATTCTGATAACATGCATACAATACATGACAGTGATGGTAAATTAGCAAATGCTTCACCAGCTGATGAGAATGTTGTTGAAGAAGTGGAAGGTAGTAGCCCTACTGGTGGTTATACTGACAATGGGGAGAACGTGTCAGAAATGGGTGCTTCAATGGAAATAAATAGCCCCAATCAAGATGTAGTTGCGAATGCTGTAACCACAGGTGAGAGCAGCATGGAAGAAACCAATGCTGTTACGGAGGAGACAAAATAG 1605 0.4237 MYMWKTXTPKGTPLRDELRINEDMNMHESTKRELQRQADMRRSLRSGLGSLPQPKNEYQIVMEPVTEDAEEPEEKIEEDMSDRIAREKAEEEARQEALLRKRSKVLQRELPRPPAASLELIRNSLIRSDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDDKVNKEKKKGVKRSADLSAVPVIEDFEEDEMKDADKLIKEEVQYLCAAMGHENEPLEEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRKKLDDDKEKMVRLEKKVTVITQGYEMRAKKSIWQQIEATFKQMDIAATELECFKALQNQEQLAASHRINNLWSEVQKQKELEKTLQNRYGSLIEELEKMQNIMNQSRLKAEQQKEIEANNAHAETKVNETDVQDTGSIVPHSAEDGNAQAITVESSHDGTSDQQVEIMQDKSTSSPSHDMNVDSDNMHTIHDSDGKLANASPADENVVEEVEGSSPTGGYTDNGENVSEMGASMEINSPNQDVVANAVTTGESSMEETNAVTEETK 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5693g00002 534 MobiDBLite consensus disorder prediction 404 534 - -
Vium5693g00002 534 MobiDBLite consensus disorder prediction 22 40 - -
Vium5693g00002 534 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 7 371 IPR047242 GO:0000398|GO:0000974
Vium5693g00002 534 Pfam pre-mRNA splicing factor component 7 222 IPR021786 -
Vium5693g00002 534 MobiDBLite consensus disorder prediction 484 526 - -
Vium5693g00002 534 Coils Coil 350 384 - -
Vium5693g00002 534 MobiDBLite consensus disorder prediction 404 451 - -
Vium5693g00002 534 Coils Coil 250 284 - -
Vium5693g00002 534 MobiDBLite consensus disorder prediction 22 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5693g00002 Vium-Chr5693 7456 11881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5693g00002 6 411 MYB-Related Transcription Factor Family AT1G09770 61.125 1.37e-149 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5693g00002 K12860 - gmx:100801352 755.747