Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5693g00001 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGTAAGAATCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTACGAGTGGCTTGATCCCTCCATAAAGAAGACTGAGTGGACTAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTCATGCCCACTCAGTGGAGAACAATTGCTCCAATTGTAGGTCGTACACCTTCTCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTAAAAGATGAGAACTATGAGCCTGGTGATGATCCTCGAAAATTGCGTCCTGGGGAGATTGATCCAAACCCCGAGTCAAAACCTGCACGGCCTGATCCTGTTGATATGGATGAGGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGATTAGCCAACACAAAGGGAAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCAAGGAGGCTTGCTTCCCTACAAAAGAAGAGGGAATTGAAGGCGGCTGGAATTGATATCCGGCAGCGAAAGAGAAAAAGGAAAGGAATAGACTACAATGCTGAAATTCCATTTGAGAAAAGGCCTCCTCCAGGATTTTTCTATGTTGCAGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACTATTGAAGAACTTGAGGGGAAAAGGAGGGTTGATATTGAGGCACAATTAAGAAAGCATGACATTGCTAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATATTGCATGCCAACAAATTGAATGATCCAGATACAGTAAGAAAGAGGTTAAAATTGATGCTTCCACCACCCCAGATATCTGATCAAGAATTGGATGAAATTGCTAAGTTGGGTTATGCTAGTGACCTTGCAGGGAGTCAGGAACTTACTGAAGGTAGTGGTGCTACACGTGCTCTTCTGGCTAATTATGCACAGACACCCGGTCAAGGAGTGACTCCTTTGCGAACCCCTCAGAGAACACCATCTGGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATCTTGCCAGGTTGAGGGAGTCTCAAACACCATTGTTGGGAGGAGAGAATCCGGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCTAAGAAAAAAGACATTCAGACTCCAAATCCAATGCTGACCCCATCTGCAACTCCTGGAGGTGCAGGTCTCACTCCAAGAATTGGTATGACACCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGGACTCCTTTGAGGGATGAACTACGTATTAATGAGGACATGAATATGCATGAAAGCACTAAACGTGAGCTGCAGAGACAGGCTGATATGAGAAGAAGTCTGCGTTCTGGTTTAGGAAGCCTTCCTCAGCCCAAGAATGAGTACCAAATAGTGATGGAACCAGTCACAGAAGATTCCGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGACAGGATAGCTAGAGAAAAAGCAGAAGAAGAGGCAAGACAGTAGGCATTACTTAGAAAACGATCAAAGGTCCTTCAACGGGAACTTCCTAGGCCCCCTGCTGCTTCATTGGAGCTTATAAGAAATTCCTTAATTAGATCTGATGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAGGCTGATGAGATGATTAGAAAGGAGCTTCTAACTTTACTGGAGCATGACAATGCTAAGTATCCGCTTGATGATAAAGTGAATAAGGAGAAAAAGAAAGGAGTCAAGCGATCTGCAGATTTGTCTGCGGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAAGTCCAATATCTTTGTGCCGCAATGGGACATGAAAATGAGCCCCTTGAAGAATTTATTGAAGCACATCGAACCTGCCTCAATGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTCTCCAGTGTTGCTGGGAACATGGAAAAACTAGCTGCTTTGCAAAATGAATTTGAGAATGTGAGAAAGAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGACTGTTATCACACAAGGCTACGAGATGAGAGCAAAGAAAAGTATCTGGCAGCAAATTGAGGCCACTTTCAAGCAGATGGATATAGCTGCAACCGAGTTAGAATGCTTTAAAGCTTTGCAAAATCAGGAGCAGTTAGCAGCATCCCACAGGATAAACAATTTGTGGAGTGAAGTACAGAAGCAAAAGGAACTTGAAAAAACTTTGCAAAACAGGTACGGGAGTCTAATTGAAGAGCTGGAGAAGATGCAAAATATCATGAACCAATCCAGATTAAAGGCAGAGCAGCAAAAAGAAATTGAAGCAAACAATGCTCATGCTGAGACCAAAGTCAATGAAACTGATGTGCAGGATACCGGGAGTATTGTACCTCACTCAGCAGAGGATGGAAATGCTCAAGCAATAACAGTCGAGTCATCACATGATGGAACTTCTGACCAGCAAGTTGAGATTATGCAAGACAAGTCGACTTCTAGCCCCAGCCATGACATGAATGTGGATTCTGATAACATGCATACAATACATGACAGTGATGGTAAATTAGCAAATGCTTCACCAGCTGATGAGAATGTTGTTGAAGAAGTGGAAGGTAGTAGCCCTACTGGTGGTTATACTGACAATGGGGAGAACGTGTCAGAAATGGGTGCTTCAATGGAAATAAATAGCCCCAATCAAGATGTAGTTGCGAATGCTGTAACCACAGGTGAGAGCAGCATGGAAGAAACCAATGCTGTTACGGAGGAGACAAAATAG 2901 0.4347 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFYVADEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKHDIAKNKIAQRQDAPSAILHANKLNDPDTVRKRLKLMLPPPQISDQELDEIAKLGYASDLAGSQELTEGSGATRALLANYAQTPGQGVTPLRTPQRTPSGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKDIQTPNPMLTPSATPGGAGLTPRIGMTPTRDGFSFSMTPKGTPLRDELRINEDMNMHESTKRELQRQADMRRSLRSGLGSLPQPKNEYQIVMEPVTEDSEEPEEKIEEDMSDRIAREKAEEEARQXALLRKRSKVLQRELPRPPAASLELIRNSLIRSDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDDKVNKEKKKGVKRSADLSAVPVIEDFEEDEMKDADKLIKEEVQYLCAAMGHENEPLEEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRKKLDDDKEKMVRLEKKVTVITQGYEMRAKKSIWQQIEATFKQMDIAATELECFKALQNQEQLAASHRINNLWSEVQKQKELEKTLQNRYGSLIEELEKMQNIMNQSRLKAEQQKEIEANNAHAETKVNETDVQDTGSIVPHSAEDGNAQAITVESSHDGTSDQQVEIMQDKSTSSPSHDMNVDSDNMHTIHDSDGKLANASPADENVVEEVEGSSPTGGYTDNGENVSEMGASMEINSPNQDVVANAVTTGESSMEETNAVTEETK 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5693g00001 966 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Vium5693g00001 966 FunFam CDC5 cell division cycle 5-like 60 120 - -
Vium5693g00001 966 Gene3D - 60 114 - -
Vium5693g00001 966 Coils Coil 167 187 - -
Vium5693g00001 966 SMART sant 58 105 IPR001005 -
Vium5693g00001 966 SMART sant 6 55 IPR001005 -
Vium5693g00001 966 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Vium5693g00001 966 Coils Coil 782 816 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 113 174 - -
Vium5693g00001 966 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Vium5693g00001 966 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Vium5693g00001 966 Pfam Myb-like DNA-binding domain 10 70 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 113 160 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 375 446 - -
Vium5693g00001 966 CDD SANT_CDC5_II 55 106 IPR047240 -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 458 486 - -
Vium5693g00001 966 FunFam CDC5 cell division cycle 5-like 5 59 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 399 413 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 916 958 - -
Vium5693g00001 966 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 IPR047242 GO:0000398|GO:0000974
Vium5693g00001 966 Gene3D - 5 59 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 836 883 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 343 363 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 836 966 - -
Vium5693g00001 966 Coils Coil 529 541 - -
Vium5693g00001 966 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Vium5693g00001 966 Coils Coil 682 716 - -
Vium5693g00001 966 CDD SANT 10 53 IPR001005 -
Vium5693g00001 966 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Vium5693g00001 966 Coils Coil 521 527 - -
Vium5693g00001 966 MobiDBLite consensus disorder prediction 458 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5693g00001 Vium-Chr5693 1317 7369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5693g00001 1 843 MYB-Related Transcription Factor Family AT1G09770 75.679 0.0 1247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5693g00001 Myb_Cef 9.4e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5693g00001 K12860 - gmx:100801352 1591.63