Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5691g00003 ATGTATAGGCGTCGTCATAATTTGGTTTGTGGCATATGTTTGGATTCGAAGCTAGTCTCGGAGGTTTTCAAAGATGGCAAGTGTAGCTTTTACGATCACGCATTTTGCCCTGACTGCATATCCAAGCATGTGGAAACTCTAATCCGCGACAATGATCTTTTCAATATGACTTGTCCAGACCCTAATTGTTTTATAGAATTGGAGCCTGAATCTTTCCATGCCCTTTTGCCTCGCGAAGTTATTGATAGATGGGAAATTATGAGATGTGAGTCTATGATTGATTGGTCGGAGAGGTTTTACTGCCCTTTCAAGGAATGTTCAGGCCTGTTGGTGAATGATGGAAGAGAGGTTGTGACCAGTGCTGAGTGCCCCTATTGTCATAGGCTATTCTGTGCACAGTGTAAGGTTCCTTGGCATGCAGATATGAGCTGTGGGAAATTTCAACGGAGTAAAAAAGACCCAGAGTATTCGGATGACAACTTTTTCAAGTTAGCCAAATCGAAAAAGTGGCAGAAATGTCCCCGGTGCTGTATGTATGTTCAGAAAACTGCTGGATGTATACACATGATTTGCAGGTGTGGATGCGACTTTTGCTACAGTTGTGGGATGATGTATCGGGAAGGACATAAATGCAGAAGAAGTTTTTGGTAA 651 0.4255 MYRRRHNLVCGICLDSKLVSEVFKDGKCSFYDHAFCPDCISKHVETLIRDNDLFNMTCPDPNCFIELEPESFHALLPREVIDRWEIMRCESMIDWSERFYCPFKECSGLLVNDGREVVTSAECPYCHRLFCAQCKVPWHADMSCGKFQRSKKDPEYSDDNFFKLAKSKKWQKCPRCCMYVQKTAGCIHMICRCGCDFCYSCGMMYREGHKCRRSFW 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5691g00003 216 Gene3D - 142 215 - -
Vium5691g00003 216 ProSiteProfiles TRIAD supradomain profile. 6 216 IPR044066 -
Vium5691g00003 216 SUPERFAMILY RING/U-box 161 212 - -
Vium5691g00003 216 Pfam IBR domain, a half RING-finger domain 83 144 IPR002867 GO:0008270
Vium5691g00003 216 SUPERFAMILY RING/U-box 7 94 - -
Vium5691g00003 216 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 10 207 IPR031127 GO:0004842|GO:0016567
Vium5691g00003 216 CDD BRcat_RBR_unk 96 147 - -
Vium5691g00003 216 CDD Rcat_RBR_unk 169 205 - -
Vium5691g00003 216 SMART ibrneu5 82 144 IPR002867 GO:0008270
Vium5691g00003 216 SMART ibrneu5 154 211 IPR002867 GO:0008270
Vium5691g00003 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 95 IPR013083 -
Vium5691g00003 216 SUPERFAMILY RING/U-box 90 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5691g00003 Vium-Chr5691 15942 16680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5691g00003 33 202 C3H Transcription Factor Family AT2G19610 30.769 5.28e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5691g00003 K11975 - vvo:131630288 258.84