Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5690g00022 ATGGACGACATGGCTGCCTACTACTCACAGCCCCAACCGGCGGGCCTTCTCACTTACCACCAGTACTATCAACCGCCGCCTCCGCAACCTCCTCCGTTGTTGGCGGTGGTACCACCGCCACCCGGCGCGGTTGTCCCTTCGGCGCACCACGGGCATCCGCCATACGTGGCTCAGCATCAGCAGCAAGCGGTGTTCGGTTCTTATGGCGCTCCTCAACCCTCCACGAACGAGGTTCGCACCCTCTTCGTCGCTGGCCTTCCTGAAGATGTAAAGCCCCGCGAAATCTACAATCTTTTCCGCGAATTTCCCGGCTACGAGTCTTCACATCTCCGGAGTCCCAGCAATTCGTCTCAGCCTTTTGCTTTTGCTGTGTTCGCCAGTCAGCAGTCAGCAATCATGGCAATGCATGCTCTGAATGGCATGGTGTTTGATCTTGAAAAGGGCTCCACTCTTTTTATTGATCTGGCAAAATCAAACTCTAGATCCAAACGCACTAGGATAGACGATGAGAGAACCGGTGCCGATAAGAAAGCTAGAAGTCTTGCATCATCATGGGTCACTCCTGATTCTGCAGGTGTTAGCAGCATTCACATGCCTGGAATGGGTAATCCTGCTTTCAACACGAACACGTTTGGTTATCCATCTGCACAAAGTCTTGGGAGTGCTGATGGGAATGCTGTGAGTGATGGTCGATACCTGAATATGAAGTCTTCATCTCCTTACATTCCTCAAAACTCAACCCCGTGTGCAACTTTATTTGTAGCAAATCTGGGGCCATCTTGTAATGAACAAGAGCTAATGCAAGTGTTTTCTAGATACCATGGATTTTTGAAGCTGAAGATGCAGAGCACATACGGGGCGCCAGTAGCATTTGTTGATTTCCAGGATGCCACTAGCTCAACTGAAGCTCTAAACAGTTTGCAAGGCACAATTCTTCACTCTTCGCAAACTGGCGAGGGAATGCGTTTAGAATATGCAAAATCGCGGATGGGCATGCGAAAGAAGCCAAAGTAA 1014 0.501 MDDMAAYYSQPQPAGLLTYHQYYQPPPPQPPPLLAVVPPPPGAVVPSAHHGHPPYVAQHQQQAVFGSYGAPQPSTNEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPSNSSQPFAFAVFASQQSAIMAMHALNGMVFDLEKGSTLFIDLAKSNSRSKRTRIDDERTGADKKARSLASSWVTPDSAGVSSIHMPGMGNPAFNTNTFGYPSAQSLGSADGNAVSDGRYLNMKSSSPYIPQNSTPCATLFVANLGPSCNEQELMQVFSRYHGFLKLKMQSTYGAPVAFVDFQDATSSTEALNSLQGTILHSSQTGEGMRLEYAKSRMGMRKKPK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5690g00022 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 328 IPR000504 GO:0003723
Vium5690g00022 337 FunFam RNA-binding protein with multiple splicing 2 76 166 - -
Vium5690g00022 337 MobiDBLite consensus disorder prediction 162 181 - -
Vium5690g00022 337 SUPERFAMILY RNA-binding domain, RBD 78 314 IPR035979 GO:0003676
Vium5690g00022 337 Gene3D - 242 336 IPR012677 -
Vium5690g00022 337 Gene3D - 75 168 IPR012677 -
Vium5690g00022 337 MobiDBLite consensus disorder prediction 162 177 - -
Vium5690g00022 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 158 IPR000504 GO:0003723
Vium5690g00022 337 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 223 328 - -
Vium5690g00022 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 144 IPR000504 GO:0003723
Vium5690g00022 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 315 IPR000504 GO:0003723
Vium5690g00022 337 SMART rrm1_1 80 154 IPR000504 GO:0003723
Vium5690g00022 337 SMART rrm1_1 251 324 IPR000504 GO:0003723
Vium5690g00022 337 FunFam RNA-binding protein with multiple splicing 242 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5690g00022 Vium-Chr5690 139136 142962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5690g00022 81 314 Eukaryotic Initiation Factors Gene Family AT4G34110 22.472 6.82e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5690g00022 - - gmx:100780983 548.895