Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5690g00021 ATGGACGACATGGCTGCCTACTACTCACAGCCCCAACCGGCGGGCCTTCTCACTTACCACCAGTACTATCAACCGCCGCCTCCGCAACCTCCTCCGTTGTTGGCGGTGGTACCACCGCCACCCGGCGCGGTTGTCCCTTCGGCGCACCACGGGCATCCGCCATACGTGGCTCAGCATCAGCAGCAAGCGGTGTTCGGTTCTTATGGCGCTCCTCAACCCTCCACGAACGAGGTTCGCACCCTCTTCGTCGCTGGCCTTCCTGAAGATGTAAAGCCCCGCGAAATCTACAATCTTTTCCGCGAATTTCCCGGCTACGAGTCTTCACATCTCCGGAGTCCCAGCAATTCGTCTCAGCCTTTTGCTTTTGCTGTGTTCGCCAGTCAGCAGTCAGCAATCATGGCAATGCATGCTCTGAATGGCATGGTGTTTGATCTTGAAAAGGGCTCCACTCTTTTTATTGATCTGGCAAAATCAAACTCTAGATCCAAACGCACTAGGATAGACGATGAGAGAACCGGTGCCGATAAGAAAGCTAGAAGTCTTGCATCATCATGGGTCACTCCTGATTCTGCAGGTGTTAGCAGCATTCACATGCCTGGAATGGGTAATCCTGCTTTCAACACGAACACGTTTGGTTATCCATCTGCACAAAGTCTTGGGAGTGCTGATGGGAATGCTGTGAGTGATGGTCGATACCTGAATATGAAGAAGTCTTCATCTCCTTACATTCCTCAAAACTCAACCCCGTGTGCAACTTTATTTGTAGCAAATCTGGGGCCATCTTGTAATGAACAAGAGCTAATGCAAGTGTTTTCTAGATACCATGGATTTTTGAAGCTGAAGATGCAGAGCACATACGGGGCGCCAGTAGCATTTGTTGATTTCCAGGATGCCACTAGCTCAACTGAAGCTCTAAACAGTTTGCAAGGCACAATTCTTCACTCTTCGCAAACTGGCGAGGGAATGCGTTTAGAATATGCAAAATCGCGGATGGGCATGCGAAAGAAGCCAAAGTAA 1017 0.5005 MDDMAAYYSQPQPAGLLTYHQYYQPPPPQPPPLLAVVPPPPGAVVPSAHHGHPPYVAQHQQQAVFGSYGAPQPSTNEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPSNSSQPFAFAVFASQQSAIMAMHALNGMVFDLEKGSTLFIDLAKSNSRSKRTRIDDERTGADKKARSLASSWVTPDSAGVSSIHMPGMGNPAFNTNTFGYPSAQSLGSADGNAVSDGRYLNMKKSSSPYIPQNSTPCATLFVANLGPSCNEQELMQVFSRYHGFLKLKMQSTYGAPVAFVDFQDATSSTEALNSLQGTILHSSQTGEGMRLEYAKSRMGMRKKPK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5690g00021 338 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 224 329 - -
Vium5690g00021 338 MobiDBLite consensus disorder prediction 162 181 - -
Vium5690g00021 338 FunFam RNA-binding protein with multiple splicing 243 334 - -
Vium5690g00021 338 FunFam RNA-binding protein with multiple splicing 2 76 166 - -
Vium5690g00021 338 Gene3D - 75 168 IPR012677 -
Vium5690g00021 338 MobiDBLite consensus disorder prediction 162 177 - -
Vium5690g00021 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 144 IPR000504 GO:0003723
Vium5690g00021 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 316 IPR000504 GO:0003723
Vium5690g00021 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 158 IPR000504 GO:0003723
Vium5690g00021 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 329 IPR000504 GO:0003723
Vium5690g00021 338 SMART rrm1_1 80 154 IPR000504 GO:0003723
Vium5690g00021 338 SMART rrm1_1 252 325 IPR000504 GO:0003723
Vium5690g00021 338 SUPERFAMILY RNA-binding domain, RBD 78 315 IPR035979 GO:0003676
Vium5690g00021 338 Gene3D - 243 337 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5690g00021 Vium-Chr5690 139136 142962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5690g00021 81 315 Eukaryotic Initiation Factors Gene Family AT4G34110 21.978 2.31e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5690g00021 - - gmx:100780983 555.444