Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5690g00017 ATGCCTGTGGAGCTCATGATGGGTTATAGGAACGACAGTTTCGCCGAAGAGAATGCGGTTCGAGAAGCCGCGTCAGGGCTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTGTCACACGCTCAGCTGCAACAACAACACCAACAACTTCAACAACAATCGCACGCGACCAATTCAAAGTCTTCCATGGAAATTGAATCCGATTACGGAGCTGTCGCTGACGTGGCGGTTTCCAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGAACCAGAACCGGTCACGCGCGTTTCAGAAGAGCCCCTGTGCCTCCTCCACCTCCTTCCGAACCCAGATTCTACCGCGCAACACCGCTGCAGCAGATCCCGCCGCCCACCGAACACCCTTTCATCCCAAAAAATGGTCCGATTGAGACAAAGGACTCTTCCAAGACCATCAACTTCTCTTATTCTAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACCAAACAGCCCTCTTCCTCGTCGCCTGCGGCCGCAACGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTATTTCTTCGTCTTCGTTGAAGAGGAAGTGCAGCTCTGATAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCCAGCCGATGCCATTGCTCGAAGAAGAGTAGAAAAATGAGGATGAAGAGGGTGGTGAGGGTACCCGCAATAAGTTTGAAGATGGCTGATATTCCACCGGATGATTATTCTTGGAGGAAATACGGACAGAAACCGATTAAAGGATCTCCTCATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCACGTAGAGAGGGCTCTGGATGACCCTTCTATGTTGGTAGTAACCTACGAAGGTGAACACAATCACACACTCTCTGCAGTCGAAGCTACTACTAATCTTATCCTAGAATCGTCTTAG 963 0.5151 MPVELMMGYRNDSFAEENAVREAASGLESVEKLIRLLSHAQLQQQHQQLQQQSHATNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPSEPRFYRATPLQQIPPPTEHPFIPKNGPIETKDSSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAATPFQITNLSQVSSAGKPPISSSSLKRKCSSDNLGSAKCGSSSSRCHCSKKSRKMRMKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAVEATTNLILESS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5690g00017 320 MobiDBLite consensus disorder prediction 182 218 - -
Vium5690g00017 320 Pfam Plant zinc cluster domain 198 244 IPR018872 -
Vium5690g00017 320 MobiDBLite consensus disorder prediction 119 141 - -
Vium5690g00017 320 Pfam WRKY DNA -binding domain 248 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5690g00017 320 SUPERFAMILY WRKY DNA-binding domain 243 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5690g00017 320 FunFam WRKY transcription factor 65 230 307 - -
Vium5690g00017 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 312 IPR044810 GO:0003700
Vium5690g00017 320 Coils Coil 39 59 - -
Vium5690g00017 320 Gene3D WRKY domain 232 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5690g00017 320 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5690g00017 320 MobiDBLite consensus disorder prediction 182 225 - -
Vium5690g00017 320 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5690g00017 Vium-Chr5690 101460 103192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5690g00017 1 310 WRKY Transcription Factor Family AT2G24570 45.294 2.07e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium5690g00017 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5690g00017 - - gmx:100804089 457.218