Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5690g00016 ATGCCTGTGGAGCTCATGATGGGTTATAGGAACGACAGTTTCGCCGAAGAGAATGCGGTTCGAGAAGCCGCGTCAGGGCTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTGTCACACGCTCAGCTGCAACAACAACACCAACAACTTCAACAACAATCGCACGCGACCAATTCAAAGTCTTCCATGGAAATTGAATCCGATTACGGAGCTGTCGCTGACGTGGCGGTTTCCAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGAACCAGAACCGGTCACGCGCGTTTCAGAAGAGCCCCTGTGCCTCCTCCACCTCCTTCCGAACCCAGATTCTACCGCGCAACACCGCTGCAGCAGATCCCGCCGCCCACCGAACACCCTTTCATCCCAAAAAATGGTCCGATTGAGACAAAGGACTCTTCCAAGACCATCAACTTCTCTTATTCTAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACCAAACAGCCCTCTTCCTCGTCGCCTGCGGCCGCAACGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTATTTCTTCGTCTTCGTTGAAGAGGAAGTGCAGCTCTGATAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCCAGCCGATGCCATTGCTCGAAGAAGAGAAAAATGAGGATGAAGAGGGTGGTGAGGGTACCCGCAATAAGTTTGAAGATGGCTGATATTCCACCGGATGATTATTCTTGGAGGAAATACGGACAGAAACCGATTAAAGGATCTCCTCATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCACGTAGAGAGGGCTCTGGATGACCCTTCTATGTTGGTAGTAACCTACGAAGGTGAACACAATCACACACTCTCTGCAGTCGAAGCTACTACTAATCTTATCCTAGAATCGTCTTAG 960 0.5156 MPVELMMGYRNDSFAEENAVREAASGLESVEKLIRLLSHAQLQQQHQQLQQQSHATNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPSEPRFYRATPLQQIPPPTEHPFIPKNGPIETKDSSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAATPFQITNLSQVSSAGKPPISSSSLKRKCSSDNLGSAKCGSSSSRCHCSKKRKMRMKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAVEATTNLILESS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5690g00016 319 MobiDBLite consensus disorder prediction 182 218 - -
Vium5690g00016 319 FunFam WRKY transcription factor 65 229 306 - -
Vium5690g00016 319 SUPERFAMILY WRKY DNA-binding domain 242 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5690g00016 319 MobiDBLite consensus disorder prediction 119 141 - -
Vium5690g00016 319 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5690g00016 319 Coils Coil 39 59 - -
Vium5690g00016 319 Pfam Plant zinc cluster domain 198 243 IPR018872 -
Vium5690g00016 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 311 IPR044810 GO:0003700
Vium5690g00016 319 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5690g00016 319 Gene3D WRKY domain 230 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5690g00016 319 MobiDBLite consensus disorder prediction 182 216 - -
Vium5690g00016 319 Pfam WRKY DNA -binding domain 247 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5690g00016 Vium-Chr5690 101459 103192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5690g00016 1 309 WRKY Transcription Factor Family AT2G24570 44.838 9.21e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium5690g00016 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5690g00016 - - gmx:100804089 429.869