Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5690g00012 ATGGAACCAGCTTCTGCTTATTCTTCATCTCAACCTACTCCTCCAGTTTCTAGTGCTGAAGAACAACACTCAACCAAAGTAACAGGACAGATCAACAATGCACATGATTCACCATCAACGTTATCTGCTTCTGGCATGTCATTATGGACAAAACATCTGAAATTTCCAGGCCTTGGCCTTGGACAAGCACAACAGGATTCACAGACCGATAACACAGGCATATCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCGAACGCAGTCAAAAGAAACTGCTGCTCCAGTCAATTCGGGACCTGATCAATCTAATTTAATTGAATCCTTCGCCAAAGGGTTGATGGACTCTTCCAAGAGTGCAGTAAAAGCTGTCCAGGTCAAAGCACGCCATATCGTCTCTCAGAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATATTAGCTCTGGAATTGTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTGATCAAGTTTTTTGAAACACATCATAAGGGTAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGATGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCCCCTATTCAACTTATAGCATCATTCTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTTGTCTTCTTTTGTCTCTTAAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTCCCTAGTCAAATAAGATATGTAAAATACTTTGAACGGACTTTAACACAATTCAATGGAGAAGTCCAGCCTGGTCGAAGGTGCTTACTAAGAGGGTTCCGGCTTCACAAGTGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAGTTTTGTTTGCCACAAGAAACCATCCCAAAACAAAAGATCTATTGCCAGAAGATTTCTGGATCAGTCCACCGAAGAAAGGAATTGTGGTTTTTGCTCTACCAGGAGAACCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAACTTCATTTTAATGATAGACAAGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAATAATTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGGAAGATCCCCGCTCCAGGATTCCGGGTGGAAGTTGTCATGATAGACTATAATGGCACCCTACCTTCAAGGACAAAAGCAAATTCCGCCAGCAAAGGATCTGACCGAAACACAATCAATGCCCTACCTGGTCCAAAGCCTACTACATCTAATTCAACTGAGAGTAAACTCCCGAGAAATGAAGATGATGTATTCTCAGACAGTGATGAAGAGGAGGGCCGAGATACACAAAGCAAGAAAGCTGCAACTGAGTACAAATTTCATCAAGCTTCTGAGGAGACAACAGACCACGTAGGGATGTTGACACACTCAACTGATCGATTGTCACTAAAGCATGAGGCAGGCATGCAGAACAATACTTCTGAACAATCAACTGCAGATGAACATAATAAAATTCATACAGGCAATAGCAGCACAAACGTGGAATCTGTAGGGGCAAGTGACATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCCTTTGGGGATGAAGACTTTGAAAGTGATTGA 1812 0.4134 MEPASAYSSSQPTPPVSSAEEQHSTKVTGQINNAHDSPSTLSASGMSLWTKHLKFPGLGLGQAQQDSQTDNTGISAFARLTGGLGLRTQSKETAAPVNSGPDQSNLIESFAKGLMDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDISSGIVGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICCLLLSLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTQFNGEVQPGRRCLLRGFRLHKCPYWVRPSITISDHKGVLFATRNHPKTKDLLPEDFWISPPKKGIVVFALPGEPGLAELVGDFKLHFNDRQGDFYCWMNTTMTENRIILDGSDFDGFDKRKIPAPGFRVEVVMIDYNGTLPSRTKANSASKGSDRNTINALPGPKPTTSNSTESKLPRNEDDVFSDSDEEEGRDTQSKKAATEYKFHQASEETTDHVGMLTHSTDRLSLKHEAGMQNNTSEQSTADEHNKIHTGNSSTNVESVGASDIKAIAADASVFSFGDEDFESD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5690g00012 603 MobiDBLite consensus disorder prediction 505 527 - -
Vium5690g00012 603 ProSiteProfiles Phosphatase tensin-type domain profile. 138 317 IPR029023 -
Vium5690g00012 603 ProSiteProfiles C2 tensin-type domain profile. 324 451 IPR014020 -
Vium5690g00012 603 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 252 291 IPR000387 GO:0016311|GO:0016791
Vium5690g00012 603 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 316 IPR029021 -
Vium5690g00012 603 CDD PTP_PTEN 148 312 IPR045101 GO:0016791
Vium5690g00012 603 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 123 320 - -
Vium5690g00012 603 MobiDBLite consensus disorder prediction 455 534 - -
Vium5690g00012 603 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 116 564 - -
Vium5690g00012 603 SMART PTEN_C2_2 322 450 IPR014020 -
Vium5690g00012 603 MobiDBLite consensus disorder prediction 550 576 - -
Vium5690g00012 603 MobiDBLite consensus disorder prediction 1 43 - -
Vium5690g00012 603 ProSitePatterns Tyrosine specific protein phosphatases active site. 254 264 IPR016130 GO:0016311|GO:0016791
Vium5690g00012 603 MobiDBLite consensus disorder prediction 455 489 - -
Vium5690g00012 603 Gene3D Protein tyrosine phosphatase superfamily 123 320 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5690g00012 Vium-Chr5690 50680 60750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5690g00012 36 603 Protein tyrosine phosphatase (PTP) family AT3G19420 60.136 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5690g00012 K01110 - gmx:100801622 1016.14