Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5690g00009 ATGGCTCAGCCACCCTCACCCTCCTTCCTCCTCTGTCATGAACAATACTCCTCTTTCCAACAACATTCTCCAACTCTCATAACCACCCCATCTTCACCTTCCATTTTTTCCGACGACCACCTCTTCTCCCAACACGACCACCTTCTCTCTCTACTATCCAAAGAGACCGCAACGCATTTCACTCCCTCCCCTTCCCACCACGTCGTACGCTGGATTTCTACACTTTCCCATTTCCACGGTTTCGCTCCTCTCACCACCGTTCTCGCCGTTAACTACTTCAACAGGTTCGTTAACCGAAGGAGCTTTCAGACCGAAGATAAACCGTGGAAGACTCAACTGGCAGCCGTTGCTTGCGTCTCTCTCGCAGCAAAAGTGGAGGAAACACGGGTGCCGCTTCTTTTGGAGTTGCAAGTGGAGGAATCGGAATTTGTGTTTGAAGCGAAGACCATACATACGATGGAGCTCCTCGTGTTGTCCACTCTCGAATGGAAAATGAACCCCGTCACTCCAATCTGTTTCTTTCAACACTTTCTCACAAGGCTTGATTTAAAGCGTCACTTGCACTGGGAATTTATGTGTGGGTGCCAACATGTTCTTCTTTCAGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGTCTGCTGCTATAATGATACACGTTATTGAAGAGATTGAACCATTGAATGCTGCGGAGTACCGAAGTCAACTTCTTGGTTTACTCAAAAGTAACGAGGAGCAAGTGAATGAGTGCTACAAACTGATGCTGGGACTATTGGTTTGCTGTAAAGGGATTCACAATCCTGGTCAGAGGCGCAAACGTGTCTCTGAGCCAAGTAGCCCTGATGGGGTCATTGATGCATCTTTCTGCTGTGAAAGCTCAAATGATTCGTGGTCAGTGGCATCACTTTCTGTGGAGCCAGAGTTAAAGAGGAGAAAAGATGAGGACCAGCAGATTCGTTTGCCCCCAGTGAATCGAGTGTCTATTGATGTTCTAAATATTCCTCGTTAA 1020 0.4696 MAQPPSPSFLLCHEQYSSFQQHSPTLITTPSSPSIFSDDHLFSQHDHLLSLLSKETATHFTPSPSHHVVRWISTLSHFHGFAPLTTVLAVNYFNRFVNRRSFQTEDKPWKTQLAAVACVSLAAKVEETRVPLLLELQVEESEFVFEAKTIHTMELLVLSTLEWKMNPVTPICFFQHFLTRLDLKRHLHWEFMCGCQHVLLSVIADSRVMSYLPSTLSAAIMIHVIEEIEPLNAAEYRSQLLGLLKSNEEQVNECYKLMLGLLVCCKGIHNPGQRRKRVSEPSSPDGVIDASFCCESSNDSWSVASLSVEPELKRRKDEDQQIRLPPVNRVSIDVLNIPR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5690g00009 339 SUPERFAMILY Cyclin-like 47 166 IPR036915 -
Vium5690g00009 339 SMART cyclin_7 70 159 IPR013763 -
Vium5690g00009 339 SUPERFAMILY Cyclin-like 150 263 IPR036915 -
Vium5690g00009 339 PANTHER CYCLINS 62 270 IPR039361 -
Vium5690g00009 339 Gene3D - 57 166 - -
Vium5690g00009 339 CDD CYCLIN_AtCycD-like_rpt2 168 258 - -
Vium5690g00009 339 SMART Cyclin_C_2 168 296 IPR004367 -
Vium5690g00009 339 FunFam D6-type cyclin 46 166 - -
Vium5690g00009 339 Pfam Cyclin, N-terminal domain 60 166 IPR006671 -
Vium5690g00009 339 CDD CYCLIN_AtCycD-like_rpt1 69 163 - -
Vium5690g00009 339 FunFam CYCLIN D32 167 256 - -
Vium5690g00009 339 Pfam Cyclin, C-terminal domain 168 275 IPR004367 -
Vium5690g00009 339 Gene3D - 167 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5690g00009 Vium-Chr5690 43081 44765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5690g00009 39 329 Core Cell Cycle Gene Families AT5G67260 47.097 4.37e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5690g00009 K14505 - gmx:100802683 488.804